Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 114 / 8e-31 unknown protein AT3G28970 44 / 5e-05 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047900 [exp] 418 / 2e-150 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.018G112200 [exp] 314 / 2e-109 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 110 / 4e-29 AT3G12760 415 / 1e-148 unknown protein Potri.004G122100 [exp] 47 / 4e-06 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 45 / 2e-05 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039198 [exp] 372 / 2e-132 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 372 / 9e-131 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 280 / 3e-96 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 275 / 6e-94 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 264 / 1e-90 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10009599 [exp] 110 / 1e-29 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 110 / 1e-29 AT3G12760 383 / 3e-136 unknown protein Lus10030685 [exp] 51 / 2e-07 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 45 / 2e-05 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF03556 [poplar] [flax] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Potri.003G180300.1 pacid=42785644 polypeptide=Potri.003G180300.1.p locus=Potri.003G180300 ID=Potri.003G180300.1.v4.1 annot-version=v4.1 ATGCGTCGGTCTGCATCGAAGAAGACGGGTCAATCCAATTCTACCACTGCTTCAATTACTTCATCGGCTACGGATCTTTTTCGCTCCTCCTCAAGTAAAG CATCTTCAAAAGAAATGGAGCGAATCGATAACCTATTTTACTCATATGCAAACAGGTCTTCTGGTATGATTGACCCAGAAGGAATTGAAACTCTATGTTC AGATATGGAGGTGGATCATACTGATGTTAGAATCTTGATGCTAGCTTGGAAAATGAGAGCTGAAAAACAGGGATACTTTACCCTGGAGGAGTGGCGACAG GGCCTCAAATCACTGAGGGCTGATACTCTAAATAAATTAAAAAAGGCGCTCCCGGATCTAGAGAAAGAGGTTAAGAGGCCATCAAACTTTGTGGATTTCT ATAACTATGCATTCCGGTATTGCCTAACAGAGGAGAAACAAAAGAGTATAGACATAGAGAGCATCTGCCAATTGTTGGATCTTGTTTTAGGATCCCATTT CCAAGCCCAGGTTGATTACTTCATTGAGTATCTAAAGATTCAGAGTGATTATAAGGTCATAAACATGGATCAGTGGATGGGATTTTACCGTTTTTGCAAC GAGATAAGTTTTCCAGACTTCAGTAATTATGATCCGGAGCTTGCATGGCCCCTGATCCTGGACAATTTTGTAGAATGGATGCGAGCCAAAAGGACCTAA
AA sequence Show only first row Show all	>Potri.003G180300.1 pacid=42785644 polypeptide=Potri.003G180300.1.p locus=Potri.003G180300 ID=Potri.003G180300.1.v4.1 annot-version=v4.1 MRRSASKKTGQSNSTTASITSSATDLFRSSSSKASSKEMERIDNLFYSYANRSSGMIDPEGIETLCSDMEVDHTDVRILMLAWKMRAEKQGYFTLEEWRQ GLKSLRADTLNKLKKALPDLEKEVKRPSNFVDFYNYAFRYCLTEEKQKSIDIESICQLLDLVLGSHFQAQVDYFIEYLKIQSDYKVINMDQWMGFYRFCN EISFPDFSNYDPELAWPLILDNFVEWMRAKRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15860			Domain of unknown function (DU...		Potri.003G180300 [exp]	0	1
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.007G002500 [exp]	1.41	0.6579
AT5G63940			Protein kinase protein with ad...		Potri.007G102400 [exp]	7.21	0.6095
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	10.39	0.6206	Pt-SYP81.2
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	10.67	0.6234
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	15.16	0.6145
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	15.58	0.5872
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	19.89	0.6041
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	26.32	0.6302	Pt-ATMPK20.2
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.009G012900 [exp]	32.61	0.6068
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	36.11	0.6212

Compare expression of checked genes

Potri.003G180300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.