Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1) AT2G01250 233 / 5e-77 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 231 / 2e-76 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G44120 228 / 2e-75 Ribosomal protein L30/L7 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047400 [exp] 449 / 2e-162 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.008G008000 [exp] 234 / 2e-77 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.006G073200 [exp] 229 / 1e-75 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.010G250900 [exp] 229 / 1e-75 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.018G140300 [exp] 224 / 1e-73 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019603 [exp] 374 / 2e-132 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10040040 [exp] 374 / 2e-132 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10021296 [exp] 233 / 3e-77 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 233 / 3e-77 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10004220 [exp] 233 / 5e-77 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10029423 [exp] 231 / 3e-76 AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [poplar] [flax] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [poplar] [flax] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G180700.1 pacid=42785041 polypeptide=Potri.003G180700.1.p locus=Potri.003G180700 ID=Potri.003G180700.1.v4.1 annot-version=v4.1 ATGGCAGAAGCGGAACCACTGGAGATGGCATATATATCAGAGGTGATATTGAAGAAAAGGAAGCACAAGGAAGAATCGATTGCACTTACGAGGAAAACCC AGTTGGAGTTGGGGCAACATGGTGGGAGGAAGAGGAAAGTGGAGGATATTAAAAGGCCTGAACAGCTTGTCAGGGAGTTTAGGGACAGGGAATTGGACCT CATCCGAATGAAACAGAGAACTAAGAGGGCAAAATCAGCATTGTCCACACCAAATTCAAAGCTTCTATTTGTCATTCGTCTACATGGCAAAAATGACATG CATCCAAAAACCAGGAAGATCTTATACAACCTGAGATTGACAAGAATCTTTCATGGTGTCTTCTTGAAGGCCAGCCCAGGGGTATTAGAATTGCTACAAA AGGTGGAGCCATATGTTACATATGGATATCCAAATGTTAAGAATGTGAGTGATCTGATTTACAAGAAGGGTTATGGAAAGATTGACAACAAAAGAGTTCC ACTAATTGATAATAACATTATCGAACAGGCATTAGGGAAGTATGGCATTCTATGTCTAGAAGACATTGTACATGAAGTTGCCAATGCTGGTCCACACTTC AGGGAGATCCTTAATTTTTTGGGGTCATTTTCACTTAACAAGCCAAAAGAAGGATTGCAAGGGAAAAGGGCATTATTCAAAGATGGGGGAGACACTGGGA ATCGTGAGAACCAGATTAATGATTTAATTGATAAGATGAATTAA
AA sequence Show only first row Show all	>Potri.003G180700.1 pacid=42785041 polypeptide=Potri.003G180700.1.p locus=Potri.003G180700 ID=Potri.003G180700.1.v4.1 annot-version=v4.1 MAEAEPLEMAYISEVILKKRKHKEESIALTRKTQLELGQHGGRKRKVEDIKRPEQLVREFRDRELDLIRMKQRTKRAKSALSTPNSKLLFVIRLHGKNDM HPKTRKILYNLRLTRIFHGVFLKASPGVLELLQKVEPYVTYGYPNVKNVSDLIYKKGYGKIDNKRVPLIDNNIIEQALGKYGILCLEDIVHEVANAGPHF REILNFLGSFSLNKPKEGLQGKRALFKDGGDTGNRENQINDLIDKMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.003G180700 [exp]	0	1
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	1.00	0.8889
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	5.47	0.8551
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	6.00	0.8885
AT3G17460			PHD finger family protein (.1)		Potri.008G206600 [exp]	7.07	0.8234
AT2G32600			hydroxyproline-rich glycoprote...		Potri.006G121300 [exp]	7.34	0.8795
AT1G30880			unknown protein		Potri.003G155400 [exp]	7.93	0.8302
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	10.72	0.8275
AT4G38150			Pentatricopeptide repeat (PPR)...		Potri.004G209500 [exp]	10.90	0.8329
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	11.00	0.8434
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	11.31	0.8726

Compare expression of checked genes

Potri.003G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.