Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NIP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80760 370 / 2e-129 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 288 / 3e-97 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT5G37820 185 / 6e-57 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 182 / 5e-56 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G19030 181 / 4e-55 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT4G18910 176 / 3e-53 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT1G31885 171 / 7e-51 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 151 / 8e-44 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 147 / 2e-42 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 84 / 1e-19 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046800 [exp] 449 / 2e-160 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 295 / 6e-100 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 291 / 2e-98 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G072100 [exp] 186 / 2e-57 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 184 / 5e-57 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.004G063000 [exp] 184 / 2e-56 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G083300 [exp] 174 / 9e-53 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 172 / 6e-52 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 162 / 3e-48 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024066 [exp] 372 / 4e-130 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 301 / 4e-102 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 299 / 3e-101 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 297 / 2e-100 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10041674 [exp] 275 / 2e-93 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10041675 [exp] 206 / 2e-66 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1) Lus10035999 [exp] 184 / 6e-57 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10029274 [exp] 178 / 2e-54 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10020929 [exp] 173 / 6e-52 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10041222 [exp] 160 / 6e-47 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.003G180900.1 pacid=42786778 polypeptide=Potri.003G180900.1.p locus=Potri.003G180900 ID=Potri.003G180900.1.v4.1 annot-version=v4.1 ATGGACAATGCAGAGGTTCCATCAGTTCCTTCAACCCCAGCAACACCAGGTACTCCTGGTGCTCCTCTCTTTGGTGGGTTTAAGGGGGAGAGAGGTGTTC ATGGTAGAAAATCCCTATTGAGAAGTTGCAAGTGTTTCAGTGTGGAAGAATGGGCGATGGAAGAAGGAAGATTGCCTCCTGTCTCTTGCTCACTGCCCCC TCCTCCTGTCTCACTAGCAAGAAAGGTGGGAGCTGAATTCATTGGCACTCTTATACTGATCTTTGCTGGGACAGCCACGGCCATTGTTAACCAAAAAACA CAAGGCTCGGAAACTCTCGTTGGCCTTGCTGCCTCTTCCGGACTAGCTGTAATGATCGTTATATTAGCAACAGGCCACATCTCTGGAGCTCATCTCAACC CATCTATCACCATTGCCTTTGCTGCCCTGAAACACTTTCCATGGAAACATGTGCCCGTGTACATTGGGGCACAAGTATTGGCATCATTATGTGCTGCATT TGCATTGAAGGGGATATTTCACCCTGTAATGGGAGGGGGGGTCACAGTTCCTTCTGGGGGATACGGTCAAGCTTTTGCTTTAGAGTTTATCACCAGCTTT ATTCTCATGTTCGTTGTCACTGCTGTAGCCACCGACACAAGAGCTGTGGGTGAGCTGGCGGGAATCGCGGTAGGGGCTACTGTCATGCTCAACATATTCA TTGCTGGGGAAACAACAGGGGCATCAATGAACCCAGTCAGAACATTAGGGCCAGCCATTGCTGTAAATAACTATAAAGCCATATGGATTTACCTCACTGC CCCGATCCTCGGAGCGCTGTGTGGAGCAGGAACTTACTCTGCTGTCAAGCTGCCAGAAGAAGATGGTGATTCTAATGAGAAAACATCAGCAGCAAGGAGC TTTAGGAGGTGA
AA sequence Show only first row Show all	>Potri.003G180900.1 pacid=42786778 polypeptide=Potri.003G180900.1.p locus=Potri.003G180900 ID=Potri.003G180900.1.v4.1 annot-version=v4.1 MDNAEVPSVPSTPATPGTPGAPLFGGFKGERGVHGRKSLLRSCKCFSVEEWAMEEGRLPPVSCSLPPPPVSLARKVGAEFIGTLILIFAGTATAIVNQKT QGSETLVGLAASSGLAVMIVILATGHISGAHLNPSITIAFAALKHFPWKHVPVYIGAQVLASLCAAFALKGIFHPVMGGGVTVPSGGYGQAFALEFITSF ILMFVVTAVATDTRAVGELAGIAVGATVMLNIFIAGETTGASMNPVRTLGPAIAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDGDSNEKTSAARS FRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Potri.003G180900 [exp]	0	1	Pt-NIP6.2
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	5.56	0.9528
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261201 [exp]	15.29	0.8811
AT3G55646			unknown protein		Potri.008G061700 [exp]	20.19	0.9239
					Potri.018G131900 [exp]	22.04	0.9162
AT1G08530			unknown protein		Potri.019G030400 [exp]	22.36	0.8832
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G235901 [exp]	26.98	0.8974
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.002G002900 [exp]	29.17	0.9135
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Potri.009G041000 [exp]	32.55	0.8594
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Potri.009G147100 [exp]	36.24	0.9292
					Potri.001G149500 [exp]	36.76	0.9296

Compare expression of checked genes

Potri.003G180900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.