Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 626 / 0 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 605 / 0 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 551 / 0 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G48670 391 / 5e-128 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 355 / 3e-114 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 322 / 3e-100 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT4G01180 240 / 3e-71 XH/XS domain-containing protein (.1) AT5G59390 239 / 9e-71 XH/XS domain-containing protein (.1) AT4G01780 205 / 4e-59 XH/XS domain-containing protein (.1) AT3G29375 170 / 3e-47 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 480 / 2e-161 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 401 / 1e-131 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 160 / 6e-43 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037986 [exp] 761 / 0 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 759 / 0 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 625 / 0 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002702 [exp] 467 / 2e-157 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 466 / 4e-157 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 341 / 3e-107 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037987 [exp] 237 / 6e-69 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10032933 [exp] 200 / 1e-57 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10002305 [exp] 177 / 1e-51 AT3G48670 161 / 1e-46 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000949 [exp] 177 / 6e-48 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain CL0221 [poplar] [flax] PF03470 [poplar] [flax] zf-XS XS zinc finger domain
Representative CDS sequence Show only first row Show all	>Potri.003G181000.1 pacid=42786565 polypeptide=Potri.003G181000.1.p locus=Potri.003G181000 ID=Potri.003G181000.1.v4.1 annot-version=v4.1 ATGGATCATAGTTCTGAAGAAGAGTCAGATATAAGTGAATCAGAGATTGAGGACTATAAGGACAAACCGCTAGAAGATTTGAGGTCGGGGAACCTTAGAG TGAAGGTGAATGGGTTCCTAAGATGCCCTTTCTGTGCTGGTAAAAAGAAGCAGGACTATAAGTACAAGGATCTGCTTCAACATGCAACCGGAGTATCTAA GGGTTCTGCCAGCAGAAGTGGAAAACAGAAGGCAAACCACCTTGCCTTGGCTAGATATTTGGAGATTGAACTGGCTAACGAAGCAGAGCAAACTCCACGC CAGGTTGTGCCACAGCCCATCAAGCCACCTCCAGAGCAACAGGAGCTCTTTGTATGGCCATGGATGGGAATTCTTGTGAATTTGACTGAGCAGAGGGACA ATGAGTATTGGATGAAGAAATTTGCTGAATATAAACCCTTAGAGTTTTGTACCTTTTTGAATGAAGAAGACCATTCCACCCAGGCCATAGTGAGGTTCAA CCGTGATTGGGATGGCTTTATGAACGCAACAAGATTTGAACAATTATTTGATAATGCAAATCATGGTAAAAAGGACTGGAAAACGAGGAAAACACAACCT GGATCAAGCATTTATGGCTGGCGTGCTCGTGCTGATGATCACGATTCTGATGGGCCAATAGGGGAGTACCTTCGCAGGGAAGGAAGATTGAATACTATTC CTGCCATTGTTCAGGAATCTAATGAAAGCAGAAATACTGTTGTGGCACACCTAGCTGATAAAATTGACGAGGCAAATAAAAATCTGGATAAGCTGCACTA CAACTTCAATGAGAAGAACATGTCTTTAAGAAGGATGCTTGAAGAGAAAGACAAACTACACTATGCTTTTGTTGAAGAAACAAGGAAGATGCAGCGACAC GCACGTGAAAATGTTCATAGAGTATTGGCAGAGCAGGAAAAATTGAATGATGAATTGGAGTCTAAGAAAAAAAAGCTTGATTTCTGGAGCAAAGAATTGA ACAAACGTGAAACAGTAACTGAGCGTGAGAGGCAAAAACTTGATGACGAGAAGAAAAAGAATGATACGAGGAATAGTTCTCTCCAGTTGGCATCCATGGA GCAGAGAAAGGCTGATGAGAATGTTTTAAGACTGGTTGAAGAGCAAAAGAGAGAGAAAGAAGAGGCCTTAAAGAAGATACTTCAGTTGGAAAAACAGTTG GATGCCAAACAGAAGTTGGAAATGGAGATTCAAGAGATAAAAGGGAAATTACTGGTGATGAAGCACCTTGGAGATCAAGATGATGCAGCAGTTCAAAAGA AGGTGGAGGAGATGAAGGATGAGTTGAGCCAGAAAGAGGATGATTTTACTGATATGGAATCTCTGAATCAAACTCTCATAATTAAAGAACGCCAAAGCAA TGATGAACTTCAACAAGCACGAAAAAATTTAATAGTGGGTCTGGGAGATATGCTGGGTGCTCGAACTCTTATTGGACTAAAAAGAATGGGAGAAATTGAC GAGAAGCCCTTCCATAATGCATGCAAGGAAAGATTTCCTGAGGACCCATTGTTGCATGCTTCCACTCAATGCAGCTTGTGGCAGGAGAAATTGAAGAACC CAGCGTGGCATCCATTTAAAGTTATTGATGTTGATGGGAATGCAAAGCAAATACTAAATGAAGAAGATGAGGAGCTACGAAACCTCAAGAAAGAGTGGGG GGATGAGATATACACAGCAGTTGTTACAGCTTTGAATGAGTTGGAAGAGTATAATCCTAGTGGGAGATATGTGGTTTCAGAGCTCTGGAACTTCAAAGAA GGAAGGAAAGCCACATTGAAAGAGGTCATTGCCTATATTGTGAAGAATATAAACACTCTCAAGCGCAAGAAAGCAACATGA
AA sequence Show only first row Show all	>Potri.003G181000.1 pacid=42786565 polypeptide=Potri.003G181000.1.p locus=Potri.003G181000 ID=Potri.003G181000.1.v4.1 annot-version=v4.1 MDHSSEEESDISESEIEDYKDKPLEDLRSGNLRVKVNGFLRCPFCAGKKKQDYKYKDLLQHATGVSKGSASRSGKQKANHLALARYLEIELANEAEQTPR QVVPQPIKPPPEQQELFVWPWMGILVNLTEQRDNEYWMKKFAEYKPLEFCTFLNEEDHSTQAIVRFNRDWDGFMNATRFEQLFDNANHGKKDWKTRKTQP GSSIYGWRARADDHDSDGPIGEYLRREGRLNTIPAIVQESNESRNTVVAHLADKIDEANKNLDKLHYNFNEKNMSLRRMLEEKDKLHYAFVEETRKMQRH ARENVHRVLAEQEKLNDELESKKKKLDFWSKELNKRETVTERERQKLDDEKKKNDTRNSSLQLASMEQRKADENVLRLVEEQKREKEEALKKILQLEKQL DAKQKLEMEIQEIKGKLLVMKHLGDQDDAAVQKKVEEMKDELSQKEDDFTDMESLNQTLIIKERQSNDELQQARKNLIVGLGDMLGARTLIGLKRMGEID EKPFHNACKERFPEDPLLHASTQCSLWQEKLKNPAWHPFKVIDVDGNAKQILNEEDEELRNLKKEWGDEIYTAVVTALNELEEYNPSGRYVVSELWNFKE GRKATLKEVIAYIVKNINTLKRKKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15910		FDM1	factor of DNA methylation 1, X...		Potri.003G181000 [exp]	0	1
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	6.92	0.6669
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	12.48	0.6919
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	13.56	0.6807
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.002G257400 [exp]	15.58	0.7152
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	18.70	0.7021
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	19.36	0.6920	CYP71.3
AT3G57910			D111/G-patch domain-containing...		Potri.016G048600 [exp]	28.84	0.6717
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.008G130100 [exp]	29.94	0.7020
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	30.85	0.6855	ATHK1.3
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.016G015100 [exp]	34.85	0.6688

Compare expression of checked genes

Potri.003G181000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.