Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80810 231 / 2e-64 Tudor/PWWP/MBT superfamily protein (.1.2) AT1G15940 231 / 2e-63 Tudor/PWWP/MBT superfamily protein (.1) AT4G31880 212 / 3e-57 unknown protein AT5G47690 125 / 4e-29 binding (.1.2.3) AT5G10950 101 / 2e-22 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 63 / 7e-10 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G32620 63 / 9e-10 Enhancer of polycomb-like transcription factor protein (.1.2) AT4G32970 57 / 5e-08 unknown protein AT1G77600 55 / 3e-07 ARM repeat superfamily protein (.1.2.3) AT5G13020 49 / 9e-06 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046500 [exp] 1162 / 0 AT4G31880 267 / 1e-76 unknown protein Potri.006G263300 [exp] 236 / 8e-65 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 226 / 9e-62 AT4G31880 389 / 3e-120 unknown protein Potri.018G109600 [exp] 152 / 5e-38 AT4G31880 180 / 3e-47 unknown protein Potri.006G186700 [exp] 150 / 3e-37 AT4G31880 167 / 8e-43 unknown protein Potri.016G005400 [exp] 114 / 2e-25 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.006G004750 [exp] 103 / 4e-22 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 89 / 1e-17 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G246200 [exp] 70 / 9e-12 AT4G32620 1021 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018332 [exp] 224 / 6e-61 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 218 / 6e-59 AT4G31880 473 / 2e-152 unknown protein Lus10002307 [exp] 205 / 3e-57 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 193 / 9e-54 AT4G31880 228 / 1e-66 unknown protein Lus10038777 [exp] 115 / 1e-25 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10039082 [exp] 103 / 3e-22 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10025655 [exp] 64 / 4e-10 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 63 / 1e-09 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10021959 [exp] 59 / 2e-08 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10010010 [exp] 59 / 2e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G181300.2 pacid=42787017 polypeptide=Potri.003G181300.2.p locus=Potri.003G181300 ID=Potri.003G181300.2.v4.1 annot-version=v4.1 ATGCCTAACAGTGAGACTGAGCTTGAAGAACGGCTTAAAGAGGCTGGAAATAGTCTCTTAAACCCTCCATCATCTGTTGATGACCTTCTTGACTCCCTCG ATAAACTGGAGCGTTTGCTCACAAATGTGGAGCAAGCACCATCAAGATCAATGCAAGATGCTCTTTTACCACCAATGAAGGCATTAATCTCTAGTGCCAT TTTGAGGCACTTGGACGAAGATGTAAGGGTTGCGGTTGCATCTTGCATGAGTGAGATTACAAGAATAACAGCACCAGATGCTCCTTACAATGATGACCTA ATGAAGGAAATTTTTCAATTGACTGTAGCATCTTTTGAAAAATTATCCCATGAGTCTGGCCATTGTTATACAAAGGCAGTTTCAATTCTTGAGAATGTAG CGAGGGTGAGGTCATGCTTGATGATGCTGGACCTGGAGTTGGATGAACTAATTTTAGATATGTTCCAATACTTTCTGAAATTCATCAGGTCCAATCATCC ACAAATTGCAATCTTGGCCATGGAAACAATTATGACCCTGGTCATTGATGAAAGTGAAGAAATCTCAGTGGAGCTTCTCACTCTCCTTTTAGTGAGTGTA AAAAAGCAAAACCAGAGTTTTTCTCCTATAGCATGGAAGCTTGGGGAAAGAGTTATCACTAATTGTGCTGCTAAAATTAAGCCCTATCTCAAGGAAGCTG TGCAGTCTACAGGCATACCTTTGGATGAATATGCTCCAATAGTTGCTTCTATATTCCAAGATGAGTCTCACACACTCGAATGTGATTATAACAATCATTC TGGGGAACCTTTGGGATCATCACCAAATGCTGCTTGTCGTAAAGAAGTTTTTGAAGGTAAGGATGTGATTCCAAAGTCAATAGCAAGGAATGGAACTGCT TCAATTAGAAATGCCGGGACTGTTAAAAAGGATAATGCTTCAAAAATGCTAGAGCCTTGCTCTCATACTGAGCATTCTAAAAGCACCAATGCACAGGACA AAGCAGAACCTGAAGTCATGTTAGAAATGGAGCCAAAGGCTGTTCCAAGTAAAAGGGGCTGGAAACCTAATTCTTTGATGAATCCAGAAGAAGGCTATGA TCCTTGGTTTTCAACAGGAAGAAAAACTACCAAACTTCTCCGTGAAAAGCTTCAAGATAAGGGCAACGATGATTTACCCTCAGAAACTCCAGATTCCAAG AAGGTAGCTCTGTCATTAATGCATGTGAAAGTGACAAAACCTACAAGATTTACCCCCAAAACTGTTCAAATCTCAAGGTCTTCTTCCCTAACCCCACAAC AAGACATAACTGCTGGAAGTCATTTTAAAAGAGGCCGGCCAAAGAAAAAGGGAAACAGTATGAGTGAAGATGCTGATCCAAGTCCTTCATTGTTGTCAAA GCGTGAAAGCATGAGTGCTCAGGTCGAAGAGAAAGCTCCAGAATTCGATGATGCCAGTTTGAGAAAGCAGTCTAAAGAAAGAAGTGACTCAGAAGCAAAG AAACAAAAACGCTTAAGAAAAAATGAACTTCCCTCAAAGACTCCTAAGAAGATATCTCTGTCTTCTGGACGTGTAGTATCTTCAAAGAAATCAGTGGTCC TCAGTGAACCAGAGGAAAAGCCTGTCCACCAGCCAGTTGTGATTGCAGTAAGGAGATTTAATAAGCACCGCACTGCAGTCCCAACAGGCACAAAAAAGAA GTCTTTGGATGTTAATTCAGACGAGGATGTTGGGGAAGCATTTAGAGATAAGAAGATAAAATCATTAGACATGGATGGAAGTTACCTGGAAGAAACCCCA CAACCAAAGCTCAAGAGGAAGCGTACTCCAAGGAAGGAAGTGTTTTCTGGAACTCCTGATCTTGGTGAGCAATTGGTTGGTAACAAAATAAAGGTTTGGT GGCCAATGGATAAGAGGTTCTATGAAGGAGTTGTTGATTCCTACGACCCCATCAAAAAGAAGCACAAGGTCCTGTATGCTGATGGGGATGAAGAGAAGCT TAATCTCAAAAAGCAGCGATGGGAATTCATTGAAGATGGTATCTTTCCAGTTCAAGGGCATGAGATTGATGTTCCAAAACCTGGTACTTCATCTGATATA CTGCAAAAAGTGAACAGTGAAACCAAGTCAGAGTCAAAAAAAAAATCGAAGGCTGTTTCATCCTCAAAAAGGAGCAGAGCTGCCAGCATTTCCAAAACCA CCGCTAGAAGATTTGCTGGCAAATCTGCATATGGTGCTGTCCATGACGAACCAATTCGTGTTGACAAACCTGCAGATCATGACACATCTGGGCCAGGTAG TGGTTCAGAAGATGGTAAAAACACACCTGGGCCAGGCGGCAGTTCAAAAGATGATGGTGAAAATTCTACTGTCAAGTTGAAGATTCACGATCCACAACGG ATTGATAACAACTCCAAGCAAGCAATGCCAGAGACTGTAAATACATCTGACAATGGAAGTCCCAAAGCTGGTACCGTGTTCTGTAGCTTCAACTCTGAGC AGACCATGCCAGTTGGTGCAACCCTATCCAAGGATGAAAGTTCCAGAGGGGGTGATGAATCTCATGGCTCAGATGGACCTAAGAGGGAACAGCAGGGGGA AGCGAGCTCTTCCCTTTCACCTGAAACTGACTAG
AA sequence Show only first row Show all	>Potri.003G181300.2 pacid=42787017 polypeptide=Potri.003G181300.2.p locus=Potri.003G181300 ID=Potri.003G181300.2.v4.1 annot-version=v4.1 MPNSETELEERLKEAGNSLLNPPSSVDDLLDSLDKLERLLTNVEQAPSRSMQDALLPPMKALISSAILRHLDEDVRVAVASCMSEITRITAPDAPYNDDL MKEIFQLTVASFEKLSHESGHCYTKAVSILENVARVRSCLMMLDLELDELILDMFQYFLKFIRSNHPQIAILAMETIMTLVIDESEEISVELLTLLLVSV KKQNQSFSPIAWKLGERVITNCAAKIKPYLKEAVQSTGIPLDEYAPIVASIFQDESHTLECDYNNHSGEPLGSSPNAACRKEVFEGKDVIPKSIARNGTA SIRNAGTVKKDNASKMLEPCSHTEHSKSTNAQDKAEPEVMLEMEPKAVPSKRGWKPNSLMNPEEGYDPWFSTGRKTTKLLREKLQDKGNDDLPSETPDSK KVALSLMHVKVTKPTRFTPKTVQISRSSSLTPQQDITAGSHFKRGRPKKKGNSMSEDADPSPSLLSKRESMSAQVEEKAPEFDDASLRKQSKERSDSEAK KQKRLRKNELPSKTPKKISLSSGRVVSSKKSVVLSEPEEKPVHQPVVIAVRRFNKHRTAVPTGTKKKSLDVNSDEDVGEAFRDKKIKSLDMDGSYLEETP QPKLKRKRTPRKEVFSGTPDLGEQLVGNKIKVWWPMDKRFYEGVVDSYDPIKKKHKVLYADGDEEKLNLKKQRWEFIEDGIFPVQGHEIDVPKPGTSSDI LQKVNSETKSESKKKSKAVSSSKRSRAASISKTTARRFAGKSAYGAVHDEPIRVDKPADHDTSGPGSGSEDGKNTPGPGGSSKDDGENSTVKLKIHDPQR IDNNSKQAMPETVNTSDNGSPKAGTVFCSFNSEQTMPVGATLSKDESSRGGDESHGSDGPKREQQGEASSSLSPETD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	8.12	0.6992
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	13.74	0.7447
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	16.43	0.7348	Pt-CIP111.1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	17.20	0.7229
AT2G31340		EMB1381	embryo defective 1381 (.1)		Potri.002G224300 [exp]	17.37	0.7373
AT5G05800			unknown protein		Potri.010G076000 [exp]	22.24	0.6997
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	37.22	0.6832
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Potri.017G033400 [exp]	43.24	0.5751
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	44.18	0.6314
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	45.16	0.6884

Compare expression of checked genes

Potri.003G181300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.