Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CCR.10,CCR7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15950 503 / 0 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G80820 489 / 3e-175 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT5G19440 287 / 7e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 262 / 4e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 255 / 2e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 254 / 5e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 248 / 9e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 248 / 1e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 243 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 244 / 3e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046100 [exp] 593 / 0 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 592 / 0 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 585 / 0 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045000 [exp] 567 / 0 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 565 / 0 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045800 [exp] 390 / 2e-137 AT1G15950 350 / 1e-121 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G256400 [exp] 279 / 1e-92 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 274 / 8e-91 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G076300 [exp] 270 / 3e-89 AT5G58490 511 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041651 [exp] 554 / 0 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 545 / 0 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 483 / 1e-172 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035369 [exp] 473 / 1e-168 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 282 / 9e-94 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026385 [exp] 273 / 3e-90 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 266 / 1e-87 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 245 / 3e-79 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 244 / 5e-79 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 236 / 9e-76 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.003G181400.1 pacid=42785835 polypeptide=Potri.003G181400.1.p locus=Potri.003G181400 ID=Potri.003G181400.1.v4.1 annot-version=v4.1 ATGCCTGTTGATGCTTCATCACTTTCAGGCCAAGGCCAAACTATCTGTGTCACCGGGGCTGGTGGTTTCATTGCTTCTTGGATGGTTAAACTTCTTTTAG ATAAAGGTTACACTGTTAGAGGAACTGCGAGGAACCCAGCTGATCCCAAGAATTCTCATTTGAGGGGGCTTGAAGGAGCTGAAGAAAGATTAACTTTATG CAAAGCTGATCTTCTTGATTATGAGTCTCTTAAAGAGGCTATTCAAGGGTGTGATGGTGTTTTCCACACTGCTTCTCCTGTCACAGATGATCCGGAAGAA ATGGTGGAGCCAGCAGTGAACGGGACCAAAAATGTGATAATTGCGGCGGCTGAGGCCAAAGTCCGACGAGTGGTGTTCACGTCATCAATTGGCGCTGTGT ACATGGATCCCAATAAGGGCCCAGATGTTGTCATTGATGAGTCTTGCTGGAGTGATCTTGAATTCTGCAAGAACACCAAGAATTGGTATTGCTATGGAAA GGCTGTGGCAGAACAAGCTGCATGGGATATGGCTAAGGAGAAAGGGGTGGACCTAGTGGTGGTTAACCCAGTGCTGGTGCTTGGACCATTGTTGCAGCCC ACTGTCAATGCTAGCATCACTCACATCCTCAAGTACCTCACCGGCTCAGCCAAGACATATGCTAACTCTGTTCAAGCTTATGTGCATGTTAGGGATGTGG CACTAGCCCACATTTTAGTCTTTGAGACGCCTTCCGCCTCCGGCCGTTACCTTTGCTCTGAGAGCGTTCTCCACCGTGGAGAGGTGGTGGAAATCCTTGC AAAGTTCTTCCCTGAGTACCCCATCCCTACCAAGTGCTCAGATGAGAAGAACCCAAGAAAACAACCTTACAAGTTCTCAAACCAGAAGCTAAGGGATCTG GGTTTCGAATTCACCCCAGTAAAGCAGTGTCTGTATGAAACTGTTAAGAGTTTGCAGGAAAAGGGTCACCTTCCAATCCCAAAACAAGCTGCAGAAGAGT CTTTGAAAATTCAATAA
AA sequence Show only first row Show all	>Potri.003G181400.1 pacid=42785835 polypeptide=Potri.003G181400.1.p locus=Potri.003G181400 ID=Potri.003G181400.1.v4.1 annot-version=v4.1 MPVDASSLSGQGQTICVTGAGGFIASWMVKLLLDKGYTVRGTARNPADPKNSHLRGLEGAEERLTLCKADLLDYESLKEAIQGCDGVFHTASPVTDDPEE MVEPAVNGTKNVIIAAAEAKVRRVVFTSSIGAVYMDPNKGPDVVIDESCWSDLEFCKNTKNWYCYGKAVAEQAAWDMAKEKGVDLVVVNPVLVLGPLLQP TVNASITHILKYLTGSAKTYANSVQAYVHVRDVALAHILVFETPSASGRYLCSESVLHRGEVVEILAKFFPEYPIPTKCSDEKNPRKQPYKFSNQKLRDL GFEFTPVKQCLYETVKSLQEKGHLPIPKQAAEESLKIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.003G181400 [exp]	0	1	CCR.10,CCR7
AT1G19020			unknown protein		Potri.014G153900 [exp]	3.46	0.7843
AT5G54980			Uncharacterised protein family...		Potri.010G208300 [exp]	6.63	0.7457
AT3G47550			RING/FYVE/PHD zinc finger supe...		Potri.010G169200 [exp]	7.54	0.7306
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	8.30	0.8313
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	8.66	0.7835
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	10.00	0.8117	Pt-PAL.2,PAL2
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	13.41	0.7638
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	16.58	0.7674	SIP1.3
					Potri.001G026501 [exp]	17.54	0.7957
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	17.88	0.7930

Compare expression of checked genes

Potri.003G181400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.