Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 241 / 4e-75 Plant protein of unknown function (DUF247) (.1) AT4G31980 239 / 3e-72 unknown protein AT3G50170 235 / 9e-72 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 221 / 2e-66 Plant protein of unknown function (DUF247) (.1) AT5G22540 218 / 4e-66 Plant protein of unknown function (DUF247) (.1) AT3G50160 218 / 7e-66 Plant protein of unknown function (DUF247) (.1) AT3G50150 216 / 4e-65 Plant protein of unknown function (DUF247) (.1) AT3G50180 217 / 2e-64 Plant protein of unknown function (DUF247) (.1) AT3G50140 213 / 2e-63 Plant protein of unknown function (DUF247) (.1) AT3G47250 206 / 2e-61 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181800 [exp] 727 / 0 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 444 / 2e-154 AT4G31980 232 / 3e-69 unknown protein Potri.018G029800 [exp] 249 / 2e-78 AT4G31980 317 / 1e-101 unknown protein Potri.004G187100 [exp] 234 / 2e-72 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G206101 [exp] 233 / 2e-72 AT4G31980 253 / 2e-77 unknown protein Potri.T012600 [exp] 233 / 3e-72 AT4G31980 254 / 1e-77 unknown protein Potri.005G116100 [exp] 229 / 2e-70 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G017600 [exp] 227 / 6e-70 AT4G31980 229 / 3e-68 unknown protein Potri.003G206801 [exp] 226 / 1e-69 AT4G31980 261 / 3e-80 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009871 [exp] 288 / 1e-93 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 236 / 2e-73 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 234 / 3e-72 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 230 / 4e-71 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 219 / 1e-66 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 220 / 3e-66 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 216 / 3e-65 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 211 / 1e-63 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10035569 [exp] 201 / 2e-59 AT2G36430 427 / 2e-147 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 200 / 8e-59 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G181600.1 pacid=42787038 polypeptide=Potri.003G181600.1.p locus=Potri.003G181600 ID=Potri.003G181600.1.v4.1 annot-version=v4.1 ATGAGTCGTCGGGACCCTTTAATCGTTCAAATCGACGAAAAGCTTGGAGATTTGCCTTCTAATCACTCAACATGCAGTATTTTCAAGGTTCCTAGTCGCC TCCGCCATGTAAACGAAAGGGCATTTGAGCCGGAAATCCTCTCCATCGGCCCTTATCATCGTGGAAAAGATAAATTGAAGATGATGGAAGAACATAAAAA ACGTTATCTACAAAAGCTTCTTCAACGCAGAGGGGAAAGTAGCGTGGAAAGATATGTTATGGCCATGATTAGGGTGGAAGGAGAAGCTCGCAAATTTTAT GATCAGTCCGTAAGTCTAGGCCAGGATGAATTTGTAGAAATGCTGCTTCTTGATGGCTGCTTCATTGTTGAGCTTATTCGCAAGTCTAACAATATTCCAG TAGTAAGAGATCAAAATGACCCTGTTTTCGAAGTGTCATGGATCCTCTCAAGCATAGAAACTGATATGTTTTTACTTGAAAATCAACTTCCATTCTTTGT TCTTTGGGAGTTGTTTACTATGACGTCTGAGGTGCAGAACGAAGACTTCTTTGGTACGGCCTTAAGTTTTTGCCAGCGGATATTTCCAGGCTCAGGAAAC CATAGAATTCCTGAGAATGAATACAAGCATCTTCTGGACATATTATATCATATTGGGTATCAGACGCCTAATTCGAGGGAATCACCAGAGGACAACGATC GGTATTTCATAGGCAATGCCAAAGAGCTGCAAGAAGCTGGCATTAAATTCAAAAAGCGAGAGGGATCAAGGAGGTTGTTTGATGTTGACTTCTCGGAAAA TGGCACGATAGAAATCCCATGTTTGAGAATTTATGACACAACAGAGTCGCTATTCCGAAATCTTGTTGCCTATGAACAGTGCTCTCAGCGCAAACATCTG TACGTCACTGATTATATAAGACTGATGGATTGTTTAATCAACTCTCAAGAAGATGTGCAGATACTTCGACACTCGGGAATTATTGAAAATGGGTTGGGCG ATGATGGAATGGTCTGCTCCTTGTTCAATACACTAGGCATAAATGTCATACTCTCCCATAGTCGTTACTTTTATTATCATAAAGTATTCGACGGTGCGAA GGAGCATTGCAATCGGAAGCGCAATGTATGGATGGCGAAACTGAAGCATGATTATTTCAACAGTCCATGGGCACTGCTTTCGTTTTTAGCTGCTGTTGCA TTGCTTCTATTCACCCTGGTACAAACTGTGTTTACAGTCCTGTCTTATTTCCAAAAGGATTAG
AA sequence Show only first row Show all	>Potri.003G181600.1 pacid=42787038 polypeptide=Potri.003G181600.1.p locus=Potri.003G181600 ID=Potri.003G181600.1.v4.1 annot-version=v4.1 MSRRDPLIVQIDEKLGDLPSNHSTCSIFKVPSRLRHVNERAFEPEILSIGPYHRGKDKLKMMEEHKKRYLQKLLQRRGESSVERYVMAMIRVEGEARKFY DQSVSLGQDEFVEMLLLDGCFIVELIRKSNNIPVVRDQNDPVFEVSWILSSIETDMFLLENQLPFFVLWELFTMTSEVQNEDFFGTALSFCQRIFPGSGN HRIPENEYKHLLDILYHIGYQTPNSRESPEDNDRYFIGNAKELQEAGIKFKKREGSRRLFDVDFSENGTIEIPCLRIYDTTESLFRNLVAYEQCSQRKHL YVTDYIRLMDCLINSQEDVQILRHSGIIENGLGDDGMVCSLFNTLGINVILSHSRYFYYHKVFDGAKEHCNRKRNVWMAKLKHDYFNSPWALLSFLAAVA LLLFTLVQTVFTVLSYFQKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36430			Plant protein of unknown funct...		Potri.003G181600 [exp]	0	1
					Potri.001G021200 [exp]	1.00	0.9875
AT3G02500			unknown protein		Potri.017G112600 [exp]	2.44	0.9729
AT3G22640		PAP85	cupin family protein (.1)		Potri.006G002500 [exp]	2.82	0.9808
AT2G46640			unknown protein		Potri.014G102600 [exp]	3.00	0.9794
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.015G039100 [exp]	3.16	0.9733
					Potri.007G097700 [exp]	4.47	0.9768
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	10.48	0.9579
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206500 [exp]	11.61	0.9350	CTS2.11
AT1G11670			MATE efflux family protein (.1...		Potri.011G002200 [exp]	11.83	0.9521
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	11.83	0.9691

Compare expression of checked genes

Potri.003G181600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.