Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) AT3G50170 226 / 3e-68 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT4G31980 228 / 1e-67 unknown protein AT5G22540 216 / 1e-65 Plant protein of unknown function (DUF247) (.1) AT3G50120 215 / 4e-64 Plant protein of unknown function (DUF247) (.1) AT3G50160 212 / 4e-63 Plant protein of unknown function (DUF247) (.1) AT3G50150 211 / 1e-62 Plant protein of unknown function (DUF247) (.1) AT3G47250 208 / 6e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50140 201 / 6e-59 Plant protein of unknown function (DUF247) (.1) AT3G50180 199 / 1e-57 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181600 [exp] 738 / 0 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.001G046000 [exp] 456 / 6e-159 AT4G31980 232 / 3e-69 unknown protein Potri.018G029800 [exp] 242 / 2e-75 AT4G31980 317 / 1e-101 unknown protein Potri.003G206801 [exp] 231 / 4e-71 AT4G31980 261 / 3e-80 unknown protein Potri.005G116100 [exp] 229 / 2e-70 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G017600 [exp] 226 / 1e-69 AT4G31980 229 / 3e-68 unknown protein Potri.003G206101 [exp] 225 / 4e-69 AT4G31980 253 / 2e-77 unknown protein Potri.T012600 [exp] 225 / 6e-69 AT4G31980 254 / 1e-77 unknown protein Potri.013G146600 [exp] 221 / 1e-67 AT4G31980 236 / 1e-70 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009871 [exp] 276 / 1e-88 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 231 / 7e-71 AT4G31980 251 / 5e-76 unknown protein Lus10039777 [exp] 229 / 2e-70 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 223 / 4e-68 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 222 / 8e-67 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 220 / 1e-66 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 216 / 5e-65 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 214 / 3e-64 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 208 / 4e-62 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 203 / 3e-60 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G181800.1 pacid=42785586 polypeptide=Potri.003G181800.1.p locus=Potri.003G181800 ID=Potri.003G181800.1.v4.1 annot-version=v4.1 ATGAGTCGTCGGGACCCCTTATACGTTCAAATCAACGAAAAGCTTGGAGATTTGCCTTCTAGTCACTCAACATGCAGTATTTTCAAGGTTCCTAGTCGCC TCCGCCATGTAAACGAAAGGGCATTTGAGCCGGAAATCCTCTCCATCGGCCCTTATCATCGTGGAAAAGATAAATTGAAGATGATGGAAGAACATAAAAA ACGTTATCTACAAAAGCTTCTTCAACGCAGAGGGGAAAGTAGCGTGGAAAGATATGTTACGGCCATGACTGGGTTGGAAGGAATAGCTCGTCAATTTTAT GATCACTCCGTAGTAAGTCTAGGCCAGGATGAATTTGTTGAAATGCTGCTTCTTGATGGTTGCTTCATTGTTGAGCTTATTCGCAAGTATAACAATATTC CAGGAGTAAGAGATGACAATGACCCTGTTTTCGAAGTGTCATGGATCCTCTCAAGCATAGAAACTGATATGTTTTTACTTGAAAATCAACTTCCATTCTC TGTTCTTTGGGAGTTGTTTACTATGACGTCTGAGGTGCAGAACGAAGACTTCTTTGGTATGGCCTTAAGTTTTTGCCAGCGGATATTTCCAGGCTCAGGA AACCATAGTATTCCTGAGAATTATACATGCAAGCATCTTCTGGACATATTATATCATATTGGGTATCAGACGCCTGATTCGACGGAATCACCAAAGGACA ACGATTGGTATTTCATACGCAATGCCAAAGAGCTGCAAGAATCTGGCATTAAATTCAAAAAGCGAGAGGGATCAAGGAGGTTGTTTGATGTTGTCTTCTT GGAAAATGGCACGATAGAAATCCCATGTTTGAAAATTTATGACACAACAGAGTCGCTATTCCGAAATCTTGTTGCCTATGAACAGTGCTCCCGGTGCAAA CATCTGTACGTCACTGATTATATAACACTGATGGATTGTTTAATCAACAATCAAGAAGATGTGCAGATACTTCGACACTCGGGAATTATTGAAAATGGGT TGGGCGATGATGGAATGGTCTGCTCCTTGTTCAATAACCTAGGCATAAATGTCATACTCTCCCATCGTCGTTACTTTTATTATCATAAAGTATTCGACGG TGTGAAGGAGCATTGCAATCGGAAGCGCAATGTATGGTTGGCGAAACTGAAGCATGATTACTTCAACAGTCCATGGGCACTGCTTTCGTTTTTAGCTGCT GTTGCATTGCTTCTATTCACCCTGGTACAAACTGTGTATACAGTCATGTCTTATTCCAAAAGGATTAGCGTGACACAGATCCATTACAAAGTGCTGTCTT GTTTCAAATAA
AA sequence Show only first row Show all	>Potri.003G181800.1 pacid=42785586 polypeptide=Potri.003G181800.1.p locus=Potri.003G181800 ID=Potri.003G181800.1.v4.1 annot-version=v4.1 MSRRDPLYVQINEKLGDLPSSHSTCSIFKVPSRLRHVNERAFEPEILSIGPYHRGKDKLKMMEEHKKRYLQKLLQRRGESSVERYVTAMTGLEGIARQFY DHSVVSLGQDEFVEMLLLDGCFIVELIRKYNNIPGVRDDNDPVFEVSWILSSIETDMFLLENQLPFSVLWELFTMTSEVQNEDFFGMALSFCQRIFPGSG NHSIPENYTCKHLLDILYHIGYQTPDSTESPKDNDWYFIRNAKELQESGIKFKKREGSRRLFDVVFLENGTIEIPCLKIYDTTESLFRNLVAYEQCSRCK HLYVTDYITLMDCLINNQEDVQILRHSGIIENGLGDDGMVCSLFNNLGINVILSHRRYFYYHKVFDGVKEHCNRKRNVWLAKLKHDYFNSPWALLSFLAA VALLLFTLVQTVYTVMSYSKRISVTQIHYKVLSCFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36430			Plant protein of unknown funct...		Potri.003G181800 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050701 [exp]	6.78	0.9722
AT1G77990		SULTR2;2, AST56	SULPHATE TRANSPORTER 2;2, STAS...		Potri.002G092400 [exp]	15.23	0.9335	AST56.1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	15.49	0.9591
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.006G248000 [exp]	22.71	0.9632
AT1G25375			Metallo-hydrolase/oxidoreducta...		Potri.010G122100 [exp]	26.15	0.9576
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127600 [exp]	27.49	0.9599
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	28.61	0.9610
AT1G78850			D-mannose binding lectin prote...		Potri.011G110500 [exp]	30.04	0.9511
					Potri.001G149500 [exp]	33.16	0.9565
					Potri.008G169450 [exp]	33.24	0.9424

Compare expression of checked genes

Potri.003G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.