Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25110 459 / 5e-159 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 453 / 3e-157 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT2G25090 399 / 1e-135 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 381 / 3e-129 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 375 / 2e-126 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 372 / 1e-125 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT4G18700 347 / 2e-115 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G01810 345 / 2e-115 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G30960 342 / 8e-114 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 343 / 1e-113 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263500 [exp] 502 / 2e-176 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G019900 [exp] 493 / 8e-173 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.016G133500 [exp] 385 / 3e-130 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 382 / 2e-129 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 377 / 1e-127 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 376 / 3e-127 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 376 / 4e-127 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G156000 [exp] 372 / 1e-125 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 367 / 1e-123 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007448 [exp] 479 / 2e-167 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024448 [exp] 476 / 7e-166 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 467 / 2e-162 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 393 / 1e-133 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10041653 [exp] 382 / 1e-130 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10014163 [exp] 383 / 2e-129 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 375 / 2e-126 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 369 / 2e-124 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 362 / 1e-121 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 350 / 6e-117 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.003G181900.1 pacid=42786801 polypeptide=Potri.003G181900.1.p locus=Potri.003G181900 ID=Potri.003G181900.1.v4.1 annot-version=v4.1 ATGATGGAAACAGAGCAAGTGGCAGATGAAGATTGCCATGTCAATAATGGTGCAAGAAAGATTCTCCTGGGAAAGTACGAGATGGGGAGGTTGTTAGGAC AAGGAACGTTTGCTAAGGTCTACAGAGGGAAGAATCTTGTGACACAAGAAAATGTTGCAATCAAAGTGTTGCACAAGGATCAGGTCAAGAGGACAGGATT AATGGAGCAAATCAAGAGAGAAATCTCAATTATGCATCTTGTGAAGCATCCAAATATAGTGGAGTTGAAAGAAGTGATGGCTACCAAATCAAAGGTGTTC TTTGTAATGGAGTTTGTGAAAGGTGGTGAGTTATTTGCCAAAATCAAGAAGGGAGGGCTGGAGGAAGATCTTGCAAGAAAATATTTCCAACAGTTGATTT GTGCAGTTGATTATTGTCATAGTCGTGGCGTTTCTCATCGTGATTTAAAGCCCGAAAACTTGCTTTTGGATGACAAAGAAGACTTGAAAGTGTCCGATTT CGGGTTTTCTGCTTTGCCTGAGCAGAAATGGAACGATGGTTTGCTGCACACACGGTGTGGCACCCCTGCATATGTGGCTCCAGAGGTTCTAAGAAAGAAG GGTTATGATGGTGCTAAAGCTGATACCTGGTCTTGTGGGGTTATTCTATTCGTGCTGCTTTCAGGGCACTTGCCATTTCGCAATGAGAACGCCATGAAGA TGTATGTGAAGATTTTAAAGGCTGAATATGAGTTCCCACCGTGGATTTCAAGGGATGCCAAGAGGTTGATTTCCAATCTTCTTGTTGTGGACCCTGAGAA GAGAATTACAATCCCTGAGATCAGGGCAAATAGTTGGTTCCAAAAAGGTCTTGCTCAATCTGCTGTATCTCCTAATGATTTAGAAGATACTGAAAACGGA GTTAGAAGTGAAGATCAAGAGGAATTCCCGGGAAAAACCGGATCGAAGCATTCGCCGCCTTTTTATAATGCTTTTGAACTCATATCTTCAATGTCATCAG GATTTGATTTATCAAGTTTGTTTGAGACCAAGAGAAGAAGGGGTTCAATGTTCACTTCAAAATGTCCAGCATCAATGATCCTATCAACGTTGAAGTCCGT GGCAAAGAAGTTGAACTTTAGAGTGGCAGTGAGTGATACAGAATTTAAGGTGAAATTGCTAGGAAAAGAGGAGGGACGGAAGGGGAAACTGGCGGTGACA GCAGAGGTGTTTGAGTTGGCTGCCGAGCTTGTGGTGGTCGAGCTATCCAAGTGCTCCGGTGACACTTTTGAGTACACCAAATTCTGTGAAGAAGATGTCA GGCCTGCCCTAAAAGATATAGTTTGGAGTTGGCAAGGAGATAATATTGATTCTCATGAAGGCCAAGTAGGGACAAGTAATTAG
AA sequence Show only first row Show all	>Potri.003G181900.1 pacid=42786801 polypeptide=Potri.003G181900.1.p locus=Potri.003G181900 ID=Potri.003G181900.1.v4.1 annot-version=v4.1 MMETEQVADEDCHVNNGARKILLGKYEMGRLLGQGTFAKVYRGKNLVTQENVAIKVLHKDQVKRTGLMEQIKREISIMHLVKHPNIVELKEVMATKSKVF FVMEFVKGGELFAKIKKGGLEEDLARKYFQQLICAVDYCHSRGVSHRDLKPENLLLDDKEDLKVSDFGFSALPEQKWNDGLLHTRCGTPAYVAPEVLRKK GYDGAKADTWSCGVILFVLLSGHLPFRNENAMKMYVKILKAEYEFPPWISRDAKRLISNLLVVDPEKRITIPEIRANSWFQKGLAQSAVSPNDLEDTENG VRSEDQEEFPGKTGSKHSPPFYNAFELISSMSSGFDLSSLFETKRRRGSMFTSKCPASMILSTLKSVAKKLNFRVAVSDTEFKVKLLGKEEGRKGKLAVT AEVFELAAELVVVELSKCSGDTFEYTKFCEEDVRPALKDIVWSWQGDNIDSHEGQVGTSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.003G181900 [exp]	0	1
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.004G094100 [exp]	8.00	0.7768
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	13.71	0.8103
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	15.81	0.7976
					Potri.017G120050 [exp]	19.49	0.7548
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	20.19	0.7862
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	20.37	0.7860
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	26.15	0.7754
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.018G070000 [exp]	34.78	0.7727	Pt-SYNC3.2
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	43.30	0.7636
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.003G104400 [exp]	48.95	0.7362

Compare expression of checked genes

Potri.003G181900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.