Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07680 1758 / 0 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) AT2G34660 682 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT1G30400 672 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2) AT1G30420 661 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1) AT1G30410 655 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) AT3G60160 608 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT1G04120 602 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13080 601 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT2G47800 600 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G59140 593 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091200 [exp] 686 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Potri.004G034800 [exp] 675 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 671 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.011G043100 [exp] 658 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.001G362200 [exp] 642 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.014G180100 [exp] 635 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.001G362300 [exp] 624 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 620 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197100 [exp] 615 / 0 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041661 [exp] 1480 / 0 AT2G07680 1432 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Lus10023275 [exp] 686 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10038530 [exp] 686 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10018027 [exp] 636 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10022858 [exp] 621 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10042023 [exp] 620 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10011498 [exp] 602 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10027567 [exp] 591 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10023139 [exp] 589 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10017548 [exp] 587 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.003G182601.1 pacid=42785737 polypeptide=Potri.003G182601.1.p locus=Potri.003G182601 ID=Potri.003G182601.1.v4.1 annot-version=v4.1 ATGGAGTTCAAGAAGTCCCTCTATTGCCCTAATTCTCCCTTTGTATGGGAGGGAAACACATTCTCGGAGTGTTTTGATAATTTAGTTCCAGGATTCGGTG CGAACGTGGTGACCATTGTTATAATTTTGGTGCTTGCAATTACTCGAAGCACTGCCAGTCGAGTTCCCAGGATAAGTTGTACAGAAAAGACTGTTTTTCG TTTTCTTCCTTTCCTGGGAGCACTTGTCTCATTTATGGACTTGATTTTGCTTGTGAATAAAGAACTTCATGGAAACTTTATTGCATATCATGAGTGGCTT TTCAGAAGTTCTCAATTGATAGTCTGGACAGTTATCATAATATCATCTATGTGTGCCTGCTTACATGATGTTTTTTGCAACCGGTTCCTATGTTTCTGGT GGATCATGAAATCACTATTAGGAATCCTTCATCTGCATAGAGCATTTGGTTCAATGGAGGTCGTGAAATGCCTTAAAGACAGTTGTGTTGTTTTGTTAGA TGTCATGTTTGGCATATCCATCAACATTATCAGGATAAAACGGGCATCTCCCAAGAGCAGTTCAATGGAAGATCCACTTCTTTCTGTGGACACAGACATC GAGGAGGGTTTTCATGGAGACTCTGGAAATGCTAAGAGCTATTGGGATCACATGACATTCAGAACTATCACTTCTGTGATGAATCATGGAGTCATAAAGC AGCTTGGATTTGATGATTTACTTTCGCTACCTAATGACATGGAGCCTTCTACCTGTCATGATAAATTGTCAAGCTGCTGGAGAGTTCAGCTGAGCAGTCC TAACCCTTTCTTCTTTAAAGCAATCTTTTGTGCATATGGATGGCCGTATCTTTGTCTTGGTCTGCTTAAGGTGTTCAATGACTTTATTGGTTTTGCGGGA CCACTGCTTCTTAATAAGCTCATTCGGTTTCTTCAGCAAGATTCTATGCGATGGGACGGCTATCTTCTTGCATTATCTTTGGGCCTCACCTCTATCTTAA AATCCTTTTTTGATACACAATACTCGTTTCATCTTGGAAAATTGAAGCTAAAGCTACGATCTAGTATCATGACAGTAATTTATCAGAAGGTCCTATGTGT TACCCAATCAGAGCGATCGAAATTTTCTGAGGGGGAAATACAGACATTTATGTCAATAGATGCTGATCGAACTGTCAACTTGTGTAACAGTTTCCATGAT ATGTGGAGCTTGCCTTTGCAAATTGGAGTGGCACTGTATCTTTTGTATACACAAGTCAAGTTTGCCTTTCTTTCTGGACTGGCCATAACCATCCTTTTGA TACCAGTGAATAAATGGATTTCTGAATTGATTGCAAGTGCTACTGAGAAAATGATGAAGCAAAAAGATGAGAGGATTAGAAGGACAGGAGAAATCTTGAC TCATATTCGAACTTTAAAGATGTATGGCTGGGAGCATCTTTTCTCTAGCTGGCTGATGGAGACTAGATCCTCAGAAGTCAAGCACTTAGCTACACGAAAA TATTTGGATGCCTGGTGTGTATTCTTTTGGGCCACAACACCAACTCTTTTCTCTGTATTCACTTTTGGACTTTTTACTTTGATGGGGCATCAACTTGATG CTGCAACGGTCTTCACTTGTCTGGCTCTGTTTAATAATTTGATCTCTCCTCTTAATTCATTCCCATGGGTCATTAATGGATTAATTGATGCCTTTATATC AACTAGACGGTTGAGCAGGTTCCTCTGCTGTTCAGAATACAAACATGTACTCAAATGCAAAGCTGAGTGTGAAGATATGGCTGTCATAGTGGATGATGCT TCTTGTACTTGGTCAAGCAGTGAAGAAAAGCAACCAAACCTGGTGTTGAATCATGTGAATCTGTGCCTTTCAAAGGGTTCATTGGTTGCGATAATTGGAG AGGTTGGTTCAGGTAAATCATCCTTGTTAAGTGCAATGCTAGGAGAAATGACGCTCATCCATGGATCAGTTCATTCAAGTGGATCTGTAGCATATGTACC ACAGGTTCCGTGGATTATGTCTGGAACAATACGTGACAATATTTTGTTTGGGAAAAATTATGATTCAAGAAGATATTCAGATACAATCCGGGTCTGTGCA TTAGATGTTGATATTTCACTAATGGCTGGAGGTGACATGGCTCATATTGGATCTAAAGGAATTAACTTATCTGGTGGACAGAGAGCTCGTCTTGCTTTGG CAAGGGCCATTTATCAAGGGTTGGACACATATATGCTTGATGATGTGCTCAGTGCAGTCGATGCACAAGTTGCTAGGTGGATCTTACACAATGCTATTCT TGGTCCTTTTATGGACCAAAAGACTCGTATTCTTTGCACCCACAATGTACAGGCAATTTCTTCTGCTGATATGGTTGTTGTAATGGATAAAGGACAAGTG ACATGGGTTGGAAGTTCAGTTGACTTGGCAGTTTCATCATATCCAGCATTTTCTCCCCAAAACGAATTTGATGCACTCTCTGATGTTCAAGGGAAAGAAC TGAGCATGGCTGATTCTATTCAAGTCAGTCATAGTCACCTTCCTGAGAGGGAGTCTAATCATGTTTCAGAGGAAGTACAAGAGATCGTTGAGGCTGAGTC ACGGAAAGAGGGCAGAGTTGAACTTGCTGTATACAAGAATTATGCAGCATTTTCTGGTTGGTTCATCACAGTTGTAATATTTCTCTCAGCTATTCTAATG CAAGCTTCTCGTAATGGAAATGATCTGTGGCTGTCATTTTGGGTTGACACGGCAGGGAGCAGTCAGATAGAGTACTCAATTTCCTTTTACCTGGTTGTAC TCTGTATATTTTGCATTATAAATTCTGCTCTAACATTGGTAAGAGCATTCTCCTTTGCGTTTGGTGGGTTACGTGCTGCAGTTCAGGTGCATAATACATT GCTTAATAAGCTTATTGATGCACCCGTACAATTCTTTGATCAAACACCAGGTGGAAGAATACTTAACAGGTTTTCTTCAGATCTCTACACAATAGATGAT TCTCTTCCCTTCATCCTCAACATTCTCCTTGCCAATTTTGTTGGCCTGTTGGGAATAGCAGTAATTTTGTCATATGTGCAGGTCTTCTTCTTGCTTCTGC TATTGCCATTTTGGTTTATCTACAGCAAGCTACAGTTCTTTTACAGATCAACATCAAGGGAACTGCGAAGGCTGGACAGTGTTTCACGTTCTCCAATATA TGCAACCTTCACAGAGACACTCGATGGAGCATCCACCATTAGGGCATTCAAGTCTGAGGACTTTTTCATGGAGAAATTTATTGAGCATGTGACTTTGTAT CAGCGAACATCTTACTCGGAGATAATAGCAAGTTTGTGGCTTTCCCTGCGTCTCCAGTTGTTAGCAGCAGTTATCATCTCATTTGTTGCCATGATGGCTG TTATTGGATCTCATGACTATTTACCAATCAGCTTTGGCACCCCCGGGCTGGTAGGTTTGGCTCTCTCATATGCAGCTCCAATCGTGTCTCTATTAGGAAG TTTCTTAACAAGTTTTACTGAAACCGAGAAGGAAATGGTATCTGTTGAGAGAGCTCTTCAGTATATGGACATTCCCCAAGAAGAACTCAGGGGATCTCAG TCTCTGAATCTAGACTGGCCATTTCAAGGAACGATTGAGTTTCAGAATGTTACGATGAGATATATGCCGTCTTTGCCACCTGCACTACGTGGAATTAGTT TTACAGTTCCTGGAGGGATGAAGGTTGGAGTTGTTGGGAGAACAGGTGCTGGCAAATCTAGTATTTTGAATGCCCTTTTTCGCCTAACTCCAATATGCAG TGGTTGTATTGTCGTGGATGGCCTTGACATAACTGATGTTCCTGTTAGAGATCTCCGTCCACGCTTTGCTGTTGTTCCTCAGAGTCCATTCCTATTTGAA GGGTCATTAAGGGATAACCTAGATCCATTCCAGATGAATAATGACTTGAAAATCTGGGATATTCTGGAGAAATGCCATGTCAAAGAGGAAGTAGAATCAG CAGGCGGACTGGATATCCACGTAAAGGAATCTGGATCATCCTTTTCTGTTGGGCAAAGGCAGCTCCTTTGCCTTGCACGCGCTCTTCTTAAATTGTCCAA GGTACTTTGTTTGGATGAGTGCACAGCCAATGTTGACACTAAAACAGCTTCAATACTACAAAGTACAATATTCAGTGAATGCAGGGCCATGACGGTGATC ACGATTGCTCATCGCATTTCCACAGTTTTGAATATGGACAACATCCTTGTTCTTGACCGAGGAAACCTGGTTGAGCAAGGTAACCCAAAAGCTCTTCTAC AAGACGAATCCTCCATATTTTCAAGTTTTGCTAAAGCTTCAACAATGTAG
AA sequence Show only first row Show all	>Potri.003G182601.1 pacid=42785737 polypeptide=Potri.003G182601.1.p locus=Potri.003G182601 ID=Potri.003G182601.1.v4.1 annot-version=v4.1 MEFKKSLYCPNSPFVWEGNTFSECFDNLVPGFGANVVTIVIILVLAITRSTASRVPRISCTEKTVFRFLPFLGALVSFMDLILLVNKELHGNFIAYHEWL FRSSQLIVWTVIIISSMCACLHDVFCNRFLCFWWIMKSLLGILHLHRAFGSMEVVKCLKDSCVVLLDVMFGISINIIRIKRASPKSSSMEDPLLSVDTDI EEGFHGDSGNAKSYWDHMTFRTITSVMNHGVIKQLGFDDLLSLPNDMEPSTCHDKLSSCWRVQLSSPNPFFFKAIFCAYGWPYLCLGLLKVFNDFIGFAG PLLLNKLIRFLQQDSMRWDGYLLALSLGLTSILKSFFDTQYSFHLGKLKLKLRSSIMTVIYQKVLCVTQSERSKFSEGEIQTFMSIDADRTVNLCNSFHD MWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEKMMKQKDERIRRTGEILTHIRTLKMYGWEHLFSSWLMETRSSEVKHLATRK YLDAWCVFFWATTPTLFSVFTFGLFTLMGHQLDAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRRLSRFLCCSEYKHVLKCKAECEDMAVIVDDA SCTWSSSEEKQPNLVLNHVNLCLSKGSLVAIIGEVGSGKSSLLSAMLGEMTLIHGSVHSSGSVAYVPQVPWIMSGTIRDNILFGKNYDSRRYSDTIRVCA LDVDISLMAGGDMAHIGSKGINLSGGQRARLALARAIYQGLDTYMLDDVLSAVDAQVARWILHNAILGPFMDQKTRILCTHNVQAISSADMVVVMDKGQV TWVGSSVDLAVSSYPAFSPQNEFDALSDVQGKELSMADSIQVSHSHLPERESNHVSEEVQEIVEAESRKEGRVELAVYKNYAAFSGWFITVVIFLSAILM QASRNGNDLWLSFWVDTAGSSQIEYSISFYLVVLCIFCIINSALTLVRAFSFAFGGLRAAVQVHNTLLNKLIDAPVQFFDQTPGGRILNRFSSDLYTIDD SLPFILNILLANFVGLLGIAVILSYVQVFFLLLLLPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGASTIRAFKSEDFFMEKFIEHVTLY QRTSYSEIIASLWLSLRLQLLAAVIISFVAMMAVIGSHDYLPISFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEELRGSQ SLNLDWPFQGTIEFQNVTMRYMPSLPPALRGISFTVPGGMKVGVVGRTGAGKSSILNALFRLTPICSGCIVVDGLDITDVPVRDLRPRFAVVPQSPFLFE GSLRDNLDPFQMNNDLKIWDILEKCHVKEEVESAGGLDIHVKESGSSFSVGQRQLLCLARALLKLSKVLCLDECTANVDTKTASILQSTIFSECRAMTVI TIAHRISTVLNMDNILVLDRGNLVEQGNPKALLQDESSIFSSFAKASTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Potri.003G182601 [exp]	0	1
AT5G13980			Glycosyl hydrolase family 38 p...		Potri.014G143600 [exp]	2.23	0.8698
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	9.38	0.8715
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	9.74	0.8506
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	10.86	0.8885
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	15.29	0.8424
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	16.12	0.8612
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	16.79	0.8274
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.016G092600 [exp]	17.54	0.8572
AT2G27150		AtAAO3, At-AO3,...	Arabidopsis thaliana aldehyde ...		Potri.004G191300 [exp]	19.18	0.7877	Pt-AAO3.3,AAO2
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	19.44	0.8624

Compare expression of checked genes

Potri.003G182601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.