Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80870 787 / 0 Protein kinase superfamily protein (.1) AT4G25390 279 / 5e-84 Protein kinase superfamily protein (.1.2) AT5G51770 265 / 6e-79 Protein kinase superfamily protein (.1) AT2G45590 183 / 7e-49 Protein kinase superfamily protein (.1) AT3G24540 164 / 3e-43 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G58690 160 / 5e-43 Protein kinase superfamily protein (.1) AT3G24550 161 / 1e-41 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G29720 161 / 6e-41 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 159 / 2e-40 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G02630 153 / 9e-40 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043700 [exp] 1254 / 0 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.014G072900 [exp] 340 / 4e-107 AT2G45590 576 / 0.0 Protein kinase superfamily protein (.1) Potri.002G150800 [exp] 332 / 5e-104 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 310 / 2e-95 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 183 / 6e-49 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 164 / 3e-44 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 164 / 4e-44 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 163 / 3e-42 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G036600 [exp] 159 / 4e-42 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026069 [exp] 723 / 0 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 624 / 0 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10027393 [exp] 322 / 5e-100 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041395 [exp] 209 / 4e-58 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10031678 [exp] 171 / 7e-48 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10031679 [exp] 158 / 2e-43 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10036533 [exp] 160 / 9e-42 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10008491 [exp] 155 / 4e-41 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 160 / 5e-41 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10008540 [exp] 154 / 1e-40 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G183100.1 pacid=42786731 polypeptide=Potri.003G183100.1.p locus=Potri.003G183100 ID=Potri.003G183100.1.v4.1 annot-version=v4.1 ATGCCTTCAAGACCCTTGTCTCCAAGTTTTGACCATCCTAGACCCAGTTTCTTAACCAAAACCAGGATCTTGTTTTTGACACTCACAATCTCAGCCTCTG TGATTTTGATTCTTACCATTCTTTACTTTGTTTACCATCTTTGGTGCACCCTTGTCAATCGTTCAAGAACCATCCCTTTTGACTCTAGTGCTCCCTTAAA GCTTCAAAGATTTTCATACAAGGAGTTAAAGATTGCCACTAATGATTTTGATGATGCGAATATTATTGGCAAGGGTGGTTCTGCTACTGTCTTTAGAGGC ATTGCAAGGGATGGCAAGTTATACGCTATTAAGAGACTCGATGCTCTTTCTTTACAATCAGAGAGAGAGTTTCAGAATGAGTTGCAGATTCTCGGTGGTT TAAGATCACCTTTCTTGGTTATTCTTTTGGGGTACTGTGTTGAAAAGAATAAGCGCTTACTTGTTTACGAGTATGTGCCAAATAAAAGTTTGCAAGAATT GCTGTTTGGAGATGGTCATTTGAGTCTGTGCTGGGAGAGAAGGTTTAATATCATTCTTGATGTTGCAAAAGCACTTGAGTTTTTGCACCTTGGATGTGAC CCTCCAGTGATTCATGGGGATGTTAAGCCAAGCAATGTTTTGCTTGATTTTGATATGAGAGCAAAGATTTCAGATTTTGGGTTATCAAGGATTAAGGTGG AGGGGGAGTTTGGAGTGGATTTGTTTAGTCAAGATTTGGGAAAGAGTCAAGAGCTATGGAAGAGTCAAGAGCTTTCAGGGAATTTGACTCCAGAAACACC AGCAATTGGTACCCCTGTGGAGAGTTGTCACGAGGTAGACTTTGCTCTTGCTTTACAAGCTTCTTCTTCGTCAAAAAACAGTAGAACATGTTATAATGTT AAGGCTTTGAACTTGAATTCTGTGAATTATAACGCCAATATTGCGGGTGAGAGTGATGTCAAGGTAGGGAATGGGAAGGGGAAGGAGGTTTCAAGTGTTG ATATTGGCGGGGATGATTGGAATTGTAGATTTGTGCCGTATGATGATGAGTTTTGTAGTAATGATCATAGTAAGGAGTTGAATTGTAATAGCTTCTCTGT TGTTGACGATTCAGCTAGTAGTAAACAATGGGGAAAGGATTGGTGGTGGAGACAGGATGGGAGTGGTGAATTGTGTAGTAAAGATTATGTTATGGAGTGG ATAGGGAGCCAAATCTGCCCCTCAACAAATCCGGACTGGGAAGATGAAAAGAAAAGTACTCCTGAAAGAACAGAAATGCGTCGTTCTGTCGCATTAGATA AATTAGCTGATGCAAATGAACCTCCACGATTAAAAGATTTCAAGTTTGAAAATCTTGTTAGAGGATTCGAGAAGAAAGAATCTAGAGGCAGGAAAAACCG TCGGAAGAAAAATAGGAAGATGCAAGAGTGGTGGAAAGAAGAGCACTTGGATGAGATTAACAAGAAGGGTAGTAAGCTGAAGAATCTTGAAACAAAGTGG AGAAAAGGGTTTAAAATCCCACATTTTGATCTCGGTCGCAGGTTTCGTTTTCACAGGCGAAAGAAATTGGGAGAACAGAACCAAAATGAGACTGATCAAA ATGGGGAGTTCAGTTTCAGAAGGGGATGGAAGAAAAAGAACTTGCAATCTGCTGGAAGTGATATGTGGAGTGGGGATCTTTTCAGTCGTGAGTTAAGCAG CACAACAAGCATGAGAGGCACTCTCTGTTATGTTGCGCCAGAATATGGTGGGTGTGGATACTTGATGGAGAAGGCTGATATATACAGCTTAGGGGTTCTA ATCCTCGTGATTGTCTCCGGTAGGAGGCCATTACATGTTCTTGCTTCACCAATGAAGCTTGAAAAGGCAAATTTAATAAGTTGGTGCAGGCAGTTAGCTC AAACTGGGAACATCTTAGAACTTGTAGATGAGAGAATGAAGGATGAACACAATAAGGAGCAGGCAAGCTTGTGTATAAACTTGGCGCTGACATGCTTGCA GAGGATGCCTGAATTGAGGCCAGATATTGGAGAGATAGTGAAGATTCTGAAAGGGGAGATGGATCTACCGCATCTTCCTTTCGAATTTTCTCCCTCTCCA CCCTCCAAATTGTTTAGTAGGTCAAGGAGAAAACAAAAATCTAATGCAGAGTAG
AA sequence Show only first row Show all	>Potri.003G183100.1 pacid=42786731 polypeptide=Potri.003G183100.1.p locus=Potri.003G183100 ID=Potri.003G183100.1.v4.1 annot-version=v4.1 MPSRPLSPSFDHPRPSFLTKTRILFLTLTISASVILILTILYFVYHLWCTLVNRSRTIPFDSSAPLKLQRFSYKELKIATNDFDDANIIGKGGSATVFRG IARDGKLYAIKRLDALSLQSEREFQNELQILGGLRSPFLVILLGYCVEKNKRLLVYEYVPNKSLQELLFGDGHLSLCWERRFNIILDVAKALEFLHLGCD PPVIHGDVKPSNVLLDFDMRAKISDFGLSRIKVEGEFGVDLFSQDLGKSQELWKSQELSGNLTPETPAIGTPVESCHEVDFALALQASSSSKNSRTCYNV KALNLNSVNYNANIAGESDVKVGNGKGKEVSSVDIGGDDWNCRFVPYDDEFCSNDHSKELNCNSFSVVDDSASSKQWGKDWWWRQDGSGELCSKDYVMEW IGSQICPSTNPDWEDEKKSTPERTEMRRSVALDKLADANEPPRLKDFKFENLVRGFEKKESRGRKNRRKKNRKMQEWWKEEHLDEINKKGSKLKNLETKW RKGFKIPHFDLGRRFRFHRRKKLGEQNQNETDQNGEFSFRRGWKKKNLQSAGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGYLMEKADIYSLGVL ILVIVSGRRPLHVLASPMKLEKANLISWCRQLAQTGNILELVDERMKDEHNKEQASLCINLALTCLQRMPELRPDIGEIVKILKGEMDLPHLPFEFSPSP PSKLFSRSRRKQKSNAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	6.63	0.8887
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	9.05	0.9075
AT3G54780			Zinc finger (C3HC4-type RING f...		Potri.006G000900 [exp]	15.09	0.8391
AT2G30230			unknown protein		Potri.013G153100 [exp]	15.77	0.8569
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.001G029500 [exp]	15.90	0.7711
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.001G373100 [exp]	19.94	0.7921
AT3G54500			unknown protein		Potri.003G200300 [exp]	20.83	0.8964
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.013G138900 [exp]	23.15	0.9024
AT5G50740			Heavy metal transport/detoxifi...		Potri.016G006600 [exp]	24.18	0.8660
AT3G57980			DNA-binding bromodomain-contai...		Potri.001G013600 [exp]	25.92	0.8116

Compare expression of checked genes

Potri.003G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.