Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 2031 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1730 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1721 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15210 1651 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1647 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT2G26910 1630 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G59870 1628 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 1532 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G30842 1493 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 1435 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048700 [exp] 2154 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2150 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 2130 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2130 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 2127 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 2124 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 2089 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 2078 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 1856 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041668 [exp] 2167 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 2070 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 2041 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1965 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1949 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1937 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1803 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1652 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10019453 [exp] 1648 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10025824 [exp] 1642 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G183200.4 pacid=42785484 polypeptide=Potri.003G183200.4.p locus=Potri.003G183200 ID=Potri.003G183200.4.v4.1 annot-version=v4.1 ATGGAAGGTGCAGATGATATTTATAGAGCATGTAGTTTACAACGAGGTGGCTCTTCTTTATGGACAAACAATGTTTCAGATGCGTTCTCAAAATCTTCAA GAGATGAAGATGATGAAGAAGCTCTAAAATGGGCTGCTATTGAGAGACTACCTACTTTCAATCGTTTACAAAAAGGTTTGTTGGCTACATCAAAAGGTGC CAATGAAATCTACATTCAAAATCTTGGGATTCATGAAAGAAAGGGATTGCTCGAGAGGTTGATCGATGTTTCTGAAGAAGATAATGAGAAGTTCTTGAAA AAACTCAAGAGCCGCATTGAAAGAGTTGGAATTGATCTCCCCACAATTGAAGTTCGATTCGAGCATCTAAATATTAAAGCAGAAGCTCATGAAGGAAGCA GAGCATTGCCATCGATGATTAACTTCTGTGTTGATTTTGCAGAGGGCTTATTCAACTATCTTCACATCATTCCGAGTAAAAAGAAACAAGTTTCCATCCT TGAGGATGTTAGTGGAATCATCAAACCATCAAGAATGACATTGCTTTTGGGTCCTCCAAGTTCTGGAAAGACAACTCTTTTGTTGGCTTTGGCCGGAAAG CTTGATCCTAATCTAAAGTTCTCCGGTAGGGTGACATACAACGGTCATGGGATGAATGAGTTTGTACCCCAGAGATCAGCTGCCTATATAAGTCAGTATG ATACCCATTTAGGAGAAATGACTGTAAGGGAAACTTTGGCCTTTGCTGCAAGATGCCAAGGGGTTGGACACCGTTATGAGATGTTAGCAGAGTTATCAAG AAGAGAGAAAGAGGCAAGCATCAAGCCTGATCCTGATATTGATGTCTTCATGAAGGCTATAGCAACAGAAGGTCAGAAGACAAGTGTGATGACAGATTAT ATTATCAAGATTTTAGGACTAGAAGTCTGTGCAGATATTATGGTAGGAAGTGAAATGGTAAGGGGGATCTCTGGAGGACAAAGGAAGCGTGTTACAACTG GTGAGATGCTGGTTGGACCAGCAAAGGCTTTGTTTATGGACGAGATTTCAACTGGATTGGACAGCTCAACAACTTTCCAGATCGTGAATTCCTTGAAACA TACCATTCACATTCTCAATGGAACTGCTGTCATTTCACTCCTCCAGCCAGCACCAGAGACATACGATCTCTTTGATGACATTATTCTCCTATCTGATGGC CAGATTGTGTACCAGGGTCCCCGCGAACATGTGCTTCAATTTTTTGAATCTATGGGCTTCAAGTGTCCCGAAAGAAAAGGAGTGGCTGATTTCTTGCAAG AAATAACATCAAGGAAAGATCAGCAGCAGTATTGGATGCATAAAGATGAGCCTTACAGTTTTGTCACAGTTAAGGAATTTGCTGAAGCTTTTCAGTCTTT CCACGTCGGATGTAGAATTGGAGATGCTCTTTCAACTCCATTTGAAAAGTCCCAGAGTCATCCGGCTGCTTTGAAAACTAGAAAGTATGGCACTGGAAAA ATGGAGCTGCTTAAGGCTTGCTTCTTAAGAGAATGGCTTCTTATGAAAAGGAACTCATTTGTCTACTTCTTCAAGCTCGCGCAACTTACATTGATGTCAA TAATTGCGATGACACTCTTTTTTCGGACTGAAATGCACAAGAACTCAGTATCTGAGGGAGGAGTTTATTCGGGTGCTTTGTTCTACTCCTTGGCTTTGAT GATGTTTATCGGTATGCCAGAGATTTCCATGACCATAGGAGGCCTTCCTGTGTTTTACAAGCAAAGGGACCTCCTGTTCTATCCTTCATGGGCATTTTCT CTTCCCTCATGGATCCTTAGAATTCCTGTCACACTCATACAGACCACTATTTGGGTGGCCCTCACATATTATGTAATCGGATATGATCCTAATGTTGGAA GGTTGTTCAAACAGTATCTTCTGCTTGTTGCTGTGAGCCAGATGGCTTCTGCATTATTCCGTTTTATTGGTGGACTAGGAAGAAGCATGATTGTTGCTAA CACCTTTGGGTCATTTGCACTGCTCGTACTGTTCGCATTGGGTGGCTTTGTCTTGTCTCATGGTGACATAAAGAAATGGTGGATATGGGGTTACTGGATT TCACCACTGATGTATGGACAGAATGCAATAGTAGTTAATGAGTTCCTTGGGAAGAGCTGGAGTCATGTTCTCCCAAACTCAATCGAACCACTGGGAATCG AAGTTCTGAAATCGCGTGGATTCGTTACGGATGCATATTGGTATTGGATAGGAGTAGGTGCATTGGGGGGATTCACAATACTATTCAACATTTGCTACAC TCTGGCTCTTGCTTTCCTGAACCCATTTCGGAAGTCTCAGGCTGTTATATCCAAGGATTCTGAAAGCATTAAACCAGGAGTAACTGGAGGAGCTATTCAA TTGTCGAACCATGGAAGTAGGCACCAAAATGATACAGAGATCATCTCTGAGGCTAACAATCAGAAGAAAAAAGGAATGATTCTACCATTTGAACCTTTTT CCATCACCTTTGATGAGATCAAGTACTCGGTTGACATGCCACAGGAAATGAAAAATCAGGGCATTCTCGAAGATAAATTGGAGCTTTTGAAGGGAGTGAG CGGTGCTTTTAGGCCAGGTGTTCTCACAGCTCTAATGGGTGTCAGTGGTGCTGGTAAAACCACTCTGATGGATGTTCTGGCTGGTAGGAAAACTGGGGGA TATATTGAGGGAAACATCACAATTTCAGGCCATCCCAAGAAACAAGAAACTTTTGCTAGAATTTCAGGGTATTGCGAGCAAAATGACATCCACTCTCCAC ACGTTACAGTTTATGAATCCCTGCTCTACTCAGGCTGGCTTCGTCTACCTCCTGAAGTGAATGCTGAAACCAGAAAGATGTTCATTGAGGAAGTCATGGA GCTTGTGGAACTGAATCCATTGAGGCAAGCATTAGTTGGACTGCCTGGTGTAAGTGGCCTGTCTACTGAGCAAAGGAAGCGGCTGACTATTGCAGTTGAG CTGGTGGCGAACCCTTCTATTATATTTATGGACGAGCCTACTTCAGGTTTGGATGCAAGAGCTGCAGCAATTGTTATGAGAACGGTTAGGAACACTGTGG ACACAGGAAGAACAGTTGTGTGCACCATCCATCAGCCAAGCATCGACATATTTGAATCTTTTGATGAGCTATTTCTAATGAAGCGCGGAGGAGAAGAGAT ATATGTTGGGCCATTGGGTCGACATTCTAGCCAGTTGATCAAGTATTTTGAGGGAATTGAGGGAGTTGAGAAGATTAGAGATGGTTATAACCCAGCAACT TGGATGTTGGATGTTACCTCTTTAGGACATGAAGCAGCATCGGGGATAGATTTTGCTTCTATATATAAAAATTCAGAGCTATACAGGAGAAACAAAGCAC GTATTCAGGAATTAAGCACCCCTGCTCCTGGTTCAAAGGACCTCTTCTTTCCTACACAGTACTCGCAGTCGTTTTTGGTCCAATGCTTGGCTTGTTTATG GAAGCAACATTGGTCATATTGGCGTAATCCTTCCTATACTGCCGTAAGACTTCTCTTTACAACCGCCATAGCCTTGATTTTTGGTTCAATGTTCTGGAAC CTCGGCTCGAAAACGAAAAAGAAACAAGATCTTTTTAATGCCATGGGTTCCATGTATGCTGCAATTATCTTCCTCGGAATCCAAAATTCATCCTCTGTGC AGCCAGTTGTGGCTGTTGAAAGAACTGTATTCTACAGGGAGAAAGCTGCTGGAATGTATTCATCCATGCCCTATGCCTTGGCACAGATCCTGATTGAGCT TCCATATATTTTCACCCAATCTGTGGTATATGGTCTAATAGTCTATGCCATGATTGGATTTGAATGGACTGCTGCTAAGTTCTTTTGGTATCTGTTCTTC ATGTTCTTCACACTGTTATACTTCACCTTCTATGGCATGATGACTGTTGCTGCAACGCCAAACCAACACGTTGCATCCATAGTTTCCTCCGCATTCTATT CAGTGTGGAATCTCTTTTCAGGATTTATAATCCCAAGACCTCGGATTCCTGTATGGTGGAGATGGTATGCTTGGATATGTCCAGTTTCATGGACTTTGTA TGGATTAGTTTCTTCACAGTTTGGAGATATAAAGGAAAAACTTGATACAGGGGAAACAGTCGAAGATTTTGTCAGGAACTATTTCGGTTTCAAACATGAA CTTTTAGGAGTTGCCGCAGCAGCAGTTTTTGGATTTGCCACAATATTTGGACTTACCTTTATCATGTCCATTAAGTTTTTCAATTTCCAGAGGCGATAA
AA sequence Show only first row Show all	>Potri.003G183200.4 pacid=42785484 polypeptide=Potri.003G183200.4.p locus=Potri.003G183200 ID=Potri.003G183200.4.v4.1 annot-version=v4.1 MEGADDIYRACSLQRGGSSLWTNNVSDAFSKSSRDEDDEEALKWAAIERLPTFNRLQKGLLATSKGANEIYIQNLGIHERKGLLERLIDVSEEDNEKFLK KLKSRIERVGIDLPTIEVRFEHLNIKAEAHEGSRALPSMINFCVDFAEGLFNYLHIIPSKKKQVSILEDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGK LDPNLKFSGRVTYNGHGMNEFVPQRSAAYISQYDTHLGEMTVRETLAFAARCQGVGHRYEMLAELSRREKEASIKPDPDIDVFMKAIATEGQKTSVMTDY IIKILGLEVCADIMVGSEMVRGISGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNSLKHTIHILNGTAVISLLQPAPETYDLFDDIILLSDG QIVYQGPREHVLQFFESMGFKCPERKGVADFLQEITSRKDQQQYWMHKDEPYSFVTVKEFAEAFQSFHVGCRIGDALSTPFEKSQSHPAALKTRKYGTGK MELLKACFLREWLLMKRNSFVYFFKLAQLTLMSIIAMTLFFRTEMHKNSVSEGGVYSGALFYSLALMMFIGMPEISMTIGGLPVFYKQRDLLFYPSWAFS LPSWILRIPVTLIQTTIWVALTYYVIGYDPNVGRLFKQYLLLVAVSQMASALFRFIGGLGRSMIVANTFGSFALLVLFALGGFVLSHGDIKKWWIWGYWI SPLMYGQNAIVVNEFLGKSWSHVLPNSIEPLGIEVLKSRGFVTDAYWYWIGVGALGGFTILFNICYTLALAFLNPFRKSQAVISKDSESIKPGVTGGAIQ LSNHGSRHQNDTEIISEANNQKKKGMILPFEPFSITFDEIKYSVDMPQEMKNQGILEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG YIEGNITISGHPKKQETFARISGYCEQNDIHSPHVTVYESLLYSGWLRLPPEVNAETRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVE LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGEEIYVGPLGRHSSQLIKYFEGIEGVEKIRDGYNPAT WMLDVTSLGHEAASGIDFASIYKNSELYRRNKARIQELSTPAPGSKDLFFPTQYSQSFLVQCLACLWKQHWSYWRNPSYTAVRLLFTTAIALIFGSMFWN LGSKTKKKQDLFNAMGSMYAAIIFLGIQNSSSVQPVVAVERTVFYREKAAGMYSSMPYALAQILIELPYIFTQSVVYGLIVYAMIGFEWTAAKFFWYLFF MFFTLLYFTFYGMMTVAATPNQHVASIVSSAFYSVWNLFSGFIIPRPRIPVWWRWYAWICPVSWTLYGLVSSQFGDIKEKLDTGETVEDFVRNYFGFKHE LLGVAAAAVFGFATIFGLTFIMSIKFFNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G183200 [exp]	0	1
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	2.00	0.8686
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G123100 [exp]	2.23	0.8775
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.001G288600 [exp]	9.32	0.8721	Pt-ATPRB1.4
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	13.41	0.8759
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	14.14	0.8269
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	19.79	0.8006
AT4G33890			unknown protein		Potri.001G296200 [exp]	22.04	0.7996
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061800 [exp]	25.09	0.7916
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	27.05	0.8640
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125601 [exp]	29.41	0.8646

Compare expression of checked genes

Potri.003G183200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.