Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16010 699 / 0 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 691 / 0 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT2G03620 365 / 2e-123 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09690 311 / 7e-103 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G19640 292 / 4e-94 MRS2-3, MGT4 magnesium transporter 4 (.1) AT3G58970 278 / 4e-89 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G64560 272 / 2e-87 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT4G28580 199 / 3e-59 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09720 173 / 1e-50 Magnesium transporter CorA-like family protein (.1) AT5G09710 160 / 2e-45 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043200 [exp] 799 / 0 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.008G096200 [exp] 424 / 9e-147 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 406 / 2e-139 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.010G077900 [exp] 290 / 3e-94 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 289 / 5e-94 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.009G086300 [exp] 290 / 1e-93 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 285 / 4e-92 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.006G081700 [exp] 261 / 2e-82 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.007G098000 [exp] 259 / 7e-82 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014353 [exp] 764 / 0 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 759 / 0 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10037081 [exp] 374 / 4e-128 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10036901 [exp] 300 / 6e-99 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10021887 [exp] 279 / 6e-90 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 268 / 9e-86 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10015459 [exp] 259 / 1e-81 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10022218 [exp] 259 / 4e-80 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10026745 [exp] 241 / 3e-76 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10024860 [exp] 236 / 2e-73 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [poplar] [flax] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Potri.003G183600.16 pacid=42785250 polypeptide=Potri.003G183600.16.p locus=Potri.003G183600 ID=Potri.003G183600.16.v4.1 annot-version=v4.1 ATGGCGGACCTTAAAGAACGCCTGCTCCCTCCAAAACCAGCATCAGCTATAAACCTTAGAGATTCATCTTATCGACCATCTGCCTCTGGACGCCAACCTT TCCAAGGCGTTGATGTTCCGGGTTTGAAAAAACGTGGCCAAGGCCTTCGATCGTGGATTCGTGTTGATTCATCGGGAAATTCCCAAATTATTGAGGTTGA CAAGTTCACAATGATGCGTCGTTGTGACCTACCTGCTCGTGATTTACGCCTGCTTGATCCTCTTTTTGTTTACCCCTCAACAATCCTTGGTAGAGAGAAG GCTATAGTTGCAAACTTAGAGCAGATTCGGTGTATTATTACGGCTGATGAGGTTCTGCTCCTAAATTCCCTTGACAGCTACGTGTTGCAGTATGTAGTGG AGCTACAAAGACGATTGACAACACGGGGGGTAGGTGATGTATGGCAGTCAGAAGGTGCTGAACTGAATCGAAGGAGAAGTAGGAATTTTGACAGTGTATT TGGGAATACATCCCCTGATTATTTGCCCTTTGAGTTTAGGGCTCTTGAAGTTGCTCTGGAATCTGCTTGTACATTCCTTGATTCTCAGGCAGCAGAATTA GAAATTGAAGCATACCCATTACTAGATGAACTGACATCAAAGATCAGTACATTGAAGTTGGAACGTGTACGAAGGTTAAAAAGCAGACTTGTTGCTTTGA CTCGGAGGGTTCAGAAGGTAAGAGATGAGATTGAGCAGCTCATGGATGATGATGGAGATATGGCCGAAATGTTTCTCACTGAAAAGAAATGTAGGATGGA ATCATCATTCTATGGTGATCAATCTTTGATGGGATTTAGGTCAAATGATGGTGGGACATCTATTTCTGCTCCGGTTTCTCCTGTTTCATCACTTCCTGAT TCACGAAAACTTGAGAAAAGCCTGAGCATTGCAAGGAGCCGACATGAGAGTATGAAGAGCACTGAAAGTGCTACTGAGAATATAGAAGAGCTGGAGATGT TGCTAGAAGCGTACTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCATTGAAGGAGTACATTGATGACACGGAGGATTTCATCAACATTCAGCT GGATAATGTCCGAAATCAACTGATCCAATTTGAGCTTCTACTCACAACAGCAACATTTGTTGTCGCCATTTTTGGAGTGGTGGCAGGTATCTTTGGCATG AACTTTGCCATACCATTGTTTGATGATGCTGGTGCATTTAAGTGGGTCCTCCTAATTACTGGAGTAACTGGAGTCATCATATTTTGTGCGTTCATGCGGT TCTTCAAGTACAGAAGGCTTATGCAGCTATAG
AA sequence Show only first row Show all	>Potri.003G183600.16 pacid=42785250 polypeptide=Potri.003G183600.16.p locus=Potri.003G183600 ID=Potri.003G183600.16.v4.1 annot-version=v4.1 MADLKERLLPPKPASAINLRDSSYRPSASGRQPFQGVDVPGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREK AIVANLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTTRGVGDVWQSEGAELNRRRSRNFDSVFGNTSPDYLPFEFRALEVALESACTFLDSQAAEL EIEAYPLLDELTSKISTLKLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMFLTEKKCRMESSFYGDQSLMGFRSNDGGTSISAPVSPVSSLPD SRKLEKSLSIARSRHESMKSTESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGM NFAIPLFDDAGAFKWVLLITGVTGVIIFCAFMRFFKYRRLMQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Potri.003G183600 [exp]	0	1
AT4G02030			Vps51/Vps67 family (components...		Potri.014G120900 [exp]	5.65	0.6629
AT1G01770			unknown protein		Potri.002G157400 [exp]	10.48	0.6013
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.014G057400 [exp]	26.38	0.5949
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.005G123000 [exp]	32.18	0.5624
AT5G11030		ALF4	aberrant lateral root formatio...		Potri.006G259600 [exp]	32.46	0.5377
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	40.98	0.5796
AT2G47830			Cation efflux family protein (...		Potri.002G209023 [exp]	45.39	0.6043
AT4G04180			P-loop containing nucleoside t...		Potri.004G004000 [exp]	77.13	0.5276
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	95.24	0.5277
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.002G195700 [exp]	105.64	0.5499

Compare expression of checked genes

Potri.003G183600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.