Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 547 / 0 Protein phosphatase 2C family protein (.1.2) AT2G25070 534 / 0 Protein phosphatase 2C family protein (.1) AT5G10740 150 / 6e-42 Protein phosphatase 2C family protein (.1) AT5G24940 151 / 9e-42 Protein phosphatase 2C family protein (.1) AT2G25620 144 / 2e-39 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G51470 141 / 1e-38 Protein phosphatase 2C family protein (.1) AT1G48040 139 / 7e-38 Protein phosphatase 2C family protein (.1) AT2G33700 139 / 1e-37 Protein phosphatase 2C family protein (.1) AT4G27800 135 / 7e-37 TAP38, PPH1 PROTEIN PHOSPHATASE 1, thylakoid-associated phosphatase 38 (.1.2.3) AT3G62260 136 / 1e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043000 [exp] 663 / 0 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G265100 [exp] 564 / 0 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017701 [exp] 563 / 0 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.018G017800 [exp] 235 / 1e-76 AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) Potri.005G102500 [exp] 149 / 1e-41 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.018G115100 [exp] 149 / 1e-41 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.007G058700 [exp] 145 / 4e-40 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.006G059600 [exp] 144 / 1e-39 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.014G115500 [exp] 139 / 9e-38 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003423 [exp] 570 / 0 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042416 [exp] 565 / 0 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026253 [exp] 557 / 0 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10026885 [exp] 543 / 0 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10013124 [exp] 149 / 1e-41 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10037832 [exp] 145 / 7e-40 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10017106 [exp] 144 / 1e-39 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 142 / 5e-39 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013213 [exp] 142 / 8e-39 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 141 / 3e-38 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G183800.1 pacid=42787181 polypeptide=Potri.003G183800.1.p locus=Potri.003G183800 ID=Potri.003G183800.1.v4.1 annot-version=v4.1 ATGGGGGTATATTTGAGCTCCCCTAAAACTGACAAGGCTTCGCAAGATGGTGAGAATGATAGACTTCGATATGGTTTGTCCTCCATGCAAGGCTGGCGTA CAACCATGGAAGATTCCCATGCAGCTTATCCAGATTTGGACATTTCGACATCTTTCTTTGGTGTTTATGACGGTCATGGAGGTCAAGCAGTGGCTAAATT CTGTGCTAAATATCTTCACCAGCAAGTTCTCAGGCAGGAAAGTTATTTGTCTGGCGATTTAGGCACTTCTTTACAGAAAGCTTTCCTCAGAATGGATGAG ATGATGCGTGGGCAGAGGGGATGGAGAGAACTAGCCAGCTTGGGTGATAACATAGATAAGGTTTCTGGTATGATAGAAGGATTGATATGGTCGCCTAGAA GAGGTCAAGTCAATGGAAGTTTGGATGATTGGCCTTCTGAGGAGGGGCCTCATTCTAGCTTTCATGGACCGACTTCTGGGAGCACTGCATGTGTTGCAAT TATTCGAAACAACCAACTTTTTGTTGCAAATGCTGGTGATTCTCGTTGTGTTATATCCAGGAAGGGTCAGGCATTTGACATGTCTAAAGATCACAAGCCT GATCTTGTGGTTGAGAGAGAAAGGATTGTGAATGCCGGTGGCTTTATTGTAGTTGGACGTGTTAACGGAACTTTAAACCTGTCTAGGGCAATTGGAGATG CAGAGTTGAAGCAGAACAAAAAACTGCCTGCTGAGCAGCAAATTGTAACTGCCAATCCAGACATAAGGACTGTTGAGCTCTGTGATGATGATGAGTTTCT TGTTCTCGCTTGTGACGGGATTTGGGATTGCATGTCAAGTCAACAGCTAGTGGACTATGTGCGTGAACAGTTAAACACTGAAACTAAGCTTTCTGCGATA TGCGGAAGAGTTTTTCACAGGTGTTTGGCTCCCGATACTAATGGTGGTGAGGGGTGCGACAACATGACCATGATCTTGGTGCAATTCAAAAAACCTGTTG AATCTGGTCCTTCTGCGGAGCAGCAGCCACCATCTTCTCATCAAGCAATGAAGGTTGACACAAGTAATATGGACAAGTGA
AA sequence Show only first row Show all	>Potri.003G183800.1 pacid=42787181 polypeptide=Potri.003G183800.1.p locus=Potri.003G183800 ID=Potri.003G183800.1.v4.1 annot-version=v4.1 MGVYLSSPKTDKASQDGENDRLRYGLSSMQGWRTTMEDSHAAYPDLDISTSFFGVYDGHGGQAVAKFCAKYLHQQVLRQESYLSGDLGTSLQKAFLRMDE MMRGQRGWRELASLGDNIDKVSGMIEGLIWSPRRGQVNGSLDDWPSEEGPHSSFHGPTSGSTACVAIIRNNQLFVANAGDSRCVISRKGQAFDMSKDHKP DLVVERERIVNAGGFIVVGRVNGTLNLSRAIGDAELKQNKKLPAEQQIVTANPDIRTVELCDDDEFLVLACDGIWDCMSSQQLVDYVREQLNTETKLSAI CGRVFHRCLAPDTNGGEGCDNMTMILVQFKKPVESGPSAEQQPPSSHQAMKVDTSNMDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31860			Protein phosphatase 2C family ...		Potri.003G183800 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	2.82	0.7336
					Potri.010G116200 [exp]	3.74	0.8103
AT5G11090			serine-rich protein-related (....		Potri.018G120300 [exp]	4.24	0.7484
AT5G22400			Rho GTPase activating protein ...		Potri.016G078200 [exp]	9.74	0.7330
AT1G22040			Galactose oxidase/kelch repeat...		Potri.002G091900 [exp]	10.48	0.6887
AT3G02070			Cysteine proteinases superfami...		Potri.014G140200 [exp]	25.61	0.6733
AT3G19080			SWIB complex BAF60b domain-con...		Potri.005G134500 [exp]	30.19	0.6480
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.001G220700 [exp]	33.40	0.7296
AT4G15910		ATDI21	drought-induced 21 (.1)		Potri.010G012100 [exp]	35.09	0.7204
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.007G049800 [exp]	38.15	0.6169

Compare expression of checked genes

Potri.003G183800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.