Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 711 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 432 / 3e-135 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 427 / 4e-133 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 426 / 7e-133 EFR EF-TU receptor (.1) AT5G46330 396 / 2e-120 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47580 392 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 392 / 4e-120 Leucine-rich repeat protein kinase family protein (.1) AT2G01950 366 / 1e-109 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G65700 357 / 3e-107 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 356 / 4e-107 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042500 [exp] 1478 / 0 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G181200 [exp] 746 / 0 AT2G24130 1186 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G103400 [exp] 743 / 0 AT2G24130 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G020900 [exp] 493 / 8e-158 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 480 / 3e-153 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 478 / 2e-152 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 474 / 5e-151 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 474 / 6e-151 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 470 / 3e-149 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010772 [exp] 558 / 0 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030638 [exp] 464 / 8e-147 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 448 / 5e-141 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 446 / 2e-140 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 444 / 3e-139 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 452 / 5e-139 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 442 / 2e-138 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 441 / 5e-138 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 439 / 1e-137 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 439 / 2e-137 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G184100.1 pacid=42786397 polypeptide=Potri.003G184100.1.p locus=Potri.003G184100 ID=Potri.003G184100.1.v4.1 annot-version=v4.1 ATGATCTTCATCAGAACATTTCTGCTGCTGCTGCTCCAGCATTTATTTCTAATGTCTCCTTTTGCAGTTTCAGGTTCTCACCACCATCGTAACCATTCCT TGCTTGCTGACAAGGCTGCTCTTCTAGCATTCAAAAAGACCATAGTTTTTGATCCAAAGTCCATGCTAGCTACCTGGACTGAAGATGGAGATGTTTGCAG CTTCGCAGGTGTCAGATGCGACAAACATCGACACAGTGTGGTAAAACTCAATCTGTCCCGCAGTGAACTCACAGGGCCACTGTCTCCCATCATTTCAAAT CTCAGTGGGCTTCGAAATCTCAGTCTTTCTGAGAATAGCTTTTATGGCATTATTCCTCCTGAATTTTCTTCTCTTCAGCATCTGCATTCTCTCTTGCTAG ACAGCAACAATCTACATGGCCCATTTCCAGAATTTCTTTCCATTCTTCCCAACCTTACTGTGCTATCTCTCAACGGAAACCATTTGACGGGCGCACTTCC ACCTTCCTTCTTCTCAAACTGCACTTCATTAGCAAATATAGACCTGTCCCAGAACTTGCTCACAGGCCGAATTCCTGAAGAGATTGGAAATTGTCCAGGC ATCTGGAACCTCAATTTGTACAACAATCAATTTACAGGAGAACTTCCTGCATCTTTAGCCAACATTTCAGAGTTATATAATATAGATGTGGAGTACAACA ATCTCACTGGAGAATTGCCTGCAAATATCATAGGGAAACTATATTCAGTTGTCTCACTGCATTTATCGTATAATAATATGGTCAGCCATGATCGCAACAC CAACCTCGAGCCATTCTTCACAGCACTTGCAAATTGTACCGAATTAGAGGAGCTTGAGATGGCTGGTATGAATCTTGGAGGAAGATTGCCCAGTTCCATT GGCCGACTTAGTGTCAATCTAGATACTATGTTAATGCAAGAAAACAGGATCTCTGGAATGATTCCTTCAGAAATAGCACATCTTTCCAATCTTACAGTGC TGAATTTGACGTCCAATTCTCTAAATGGAACCATTCCAGCTGAAATCAACCAGATGTCTTCCTTGGAGCAGCTTTTCTTATCACACAACTTATTAACTGG TGCAATTCCTGCAGCATTATGTCAGCTCCCTCGTCTTGGTCTGCTTGACCTGTCAAACAATCAACTCTCTGGTGAAATTCCTGCAACTCTAGGAAACTTG GTTCGACTGAGTTTTCTGTTTCTCAACAACAACCTCCTTTCAGGAACTATTCCTCCAACATTAGGGCAGTGCACTGATCTGTCCAAGCTGGATTTGTCCT ATAACAAATTGACAGGGAGCATACCTACAGAAATATCGGGTATACGTGAGATCCGAAGATTTCTAAATCTTTCACACAATCATCTTGATGGTCCTTTACC TATAGAACTCAGTAAGCTGGAAAATGTGGAAGAGATAGATGTTTCATCAAACAACCTCAGTGGAAGTGTCTTCTTTCAGATATCAAGCTGCATCGCAGTG AAGCTGATAAATTTCTCACATAATTCTATTGAAGGGCACCTGCCTGATTCCATTGGTGATCTAAAGAACCTTGAATCCTTTGATGTTTCCGGAAACCACT TGTCTGGAGGGATCCCAACAAGCCTCAACAAAATTCAAAGCCTCAGTTTCCTAAATCTTTCTTTCAACAACTTTGCAGGAGTAATACCCTCTGGTGGTGT CTTCAATTCTGTCACAGATAAGTCATTCTTAGGCAATCGGCATCTTTGTGGCACAGTTTATGGCATGCCGAAATGCTCTCGAAAAAGAAATTGGTTTCAC TCACGTATGTTGATTATATTTGTACTGGTCACATTTGCATCAGCTATCTTAACAACAATATGTTGTGTGATTGGAATCCGCCGCATCAAGGCAACTGTTT CCTCTGGAAACTCAGTGGACGAAGAGCTGGCAAGAAAACAAAAAACACCGGAACTGATCCACAATTTTCCAAGAATTACATATAGAGAACTCTTGGAAGC CACAGAAGGATTTGAGGAGCAGAGACTACTTGGGACGGGTGGCTATGGCCGTGTTTACAAGGGACTTCTTCAAGATGGGACAGCCATAGCCGTAAAGGTA TTGCAGTTGCAGTCTGGAAATTCAACCAAGAGTTTTAACAGGGAATGCCAGGTGTTGAAGAGGATTAGGCACAGAAATTTGATAAGGATCATAACAGCAT GCAGTCTTCCTGATTTCAAGGCTCTTGTTCTTCCATACATGGCAAACGGAAGCTTGGATAGCCGTTTATATCCACATTCAGAGACAGGTTTGGGTTCAGG CAGTTCCGATTTGACTCTTCTCCAGAGGGTTAGGATTTGCAGTGACATAGCAGAAGGAATGGCCTATCTGCATCACCACTCTCCCGTTAAAGTCATACAT TGTGATCTAAAGCCAAGTAATGTTCTTCTCAACGATGACATGACCGCTCTGGTTTCTGATTTTGGTATAGCAAGATTAGTTATGACTGTTGCGGGTGGAA ACGGTGGGGCGGTTGAGAATATGGGAAACTCTACAGCAAATTTGTTATGCGGATCAGTTGGATATATCGCACCAGAGTATGGGTTTGGATCAAACACTTC TACAAAAGGAGATGTTTACAGCTTTGGCGTTCTAGTTCTTGAGATTTTGACCAGAAAAAGGCCAACAGATGACATGTTTGTTGATGGGCTAAACCTACAC AAATGGGTGAAGACTCACTACCATGGGAGAGTGGAAAGAGTGGTAGACTCTTCCTTGATGAGAGCTTCAAGAGATCAATCTCCTGAAGTGAAAAGGATGT GGGAAGTTGCAATCGGAGAATTAGCTGAGTTGGGTATTCTTTGCACTCAGGAGTCCCCCACTACTAGGCCTACAATGCTCGATGCTGCTGATGACTTGGA CAGACTAAAGAGGTATCTCAGTGGCGACACAACTGCCACTTTTGCTTCCTCTCTAGGAATGTCGTCATCCACTCTCAGTGATGACTAA
AA sequence Show only first row Show all	>Potri.003G184100.1 pacid=42786397 polypeptide=Potri.003G184100.1.p locus=Potri.003G184100 ID=Potri.003G184100.1.v4.1 annot-version=v4.1 MIFIRTFLLLLLQHLFLMSPFAVSGSHHHRNHSLLADKAALLAFKKTIVFDPKSMLATWTEDGDVCSFAGVRCDKHRHSVVKLNLSRSELTGPLSPIISN LSGLRNLSLSENSFYGIIPPEFSSLQHLHSLLLDSNNLHGPFPEFLSILPNLTVLSLNGNHLTGALPPSFFSNCTSLANIDLSQNLLTGRIPEEIGNCPG IWNLNLYNNQFTGELPASLANISELYNIDVEYNNLTGELPANIIGKLYSVVSLHLSYNNMVSHDRNTNLEPFFTALANCTELEELEMAGMNLGGRLPSSI GRLSVNLDTMLMQENRISGMIPSEIAHLSNLTVLNLTSNSLNGTIPAEINQMSSLEQLFLSHNLLTGAIPAALCQLPRLGLLDLSNNQLSGEIPATLGNL VRLSFLFLNNNLLSGTIPPTLGQCTDLSKLDLSYNKLTGSIPTEISGIREIRRFLNLSHNHLDGPLPIELSKLENVEEIDVSSNNLSGSVFFQISSCIAV KLINFSHNSIEGHLPDSIGDLKNLESFDVSGNHLSGGIPTSLNKIQSLSFLNLSFNNFAGVIPSGGVFNSVTDKSFLGNRHLCGTVYGMPKCSRKRNWFH SRMLIIFVLVTFASAILTTICCVIGIRRIKATVSSGNSVDEELARKQKTPELIHNFPRITYRELLEATEGFEEQRLLGTGGYGRVYKGLLQDGTAIAVKV LQLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDSRLYPHSETGLGSGSSDLTLLQRVRICSDIAEGMAYLHHHSPVKVIH CDLKPSNVLLNDDMTALVSDFGIARLVMTVAGGNGGAVENMGNSTANLLCGSVGYIAPEYGFGSNTSTKGDVYSFGVLVLEILTRKRPTDDMFVDGLNLH KWVKTHYHGRVERVVDSSLMRASRDQSPEVKRMWEVAIGELAELGILCTQESPTTRPTMLDAADDLDRLKRYLSGDTTATFASSLGMSSSTLSDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	0	1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	1.00	0.9178
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	2.44	0.8379
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	5.65	0.8087
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Potri.004G100400 [exp]	6.24	0.7804	CYP735A6,CYP735.2
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	6.48	0.7782
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.010G098900 [exp]	8.83	0.8149
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.010G209200 [exp]	13.22	0.7592
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.002G068200 [exp]	17.29	0.7593
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126001 [exp]	17.49	0.7729
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	20.17	0.7860

Compare expression of checked genes

Potri.003G184100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.