Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49690 550 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 400 / 4e-136 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 384 / 1e-129 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 199 / 2e-58 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT4G27570 196 / 2e-57 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 191 / 2e-55 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 190 / 6e-55 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 183 / 2e-52 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 180 / 3e-51 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 178 / 1e-50 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182575 [exp] 433 / 7e-149 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 432 / 2e-148 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 416 / 3e-142 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 340 / 8e-113 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 326 / 5e-107 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 323 / 2e-105 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 215 / 6e-67 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 221 / 2e-66 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 200 / 1e-58 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027850 [exp] 539 / 0 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 361 / 1e-120 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 355 / 2e-118 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 350 / 2e-116 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 215 / 2e-64 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 207 / 4e-63 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 182 / 6e-52 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 177 / 5e-50 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 174 / 6e-49 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 172 / 5e-48 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.003G184400.2 pacid=42786681 polypeptide=Potri.003G184400.2.p locus=Potri.003G184400 ID=Potri.003G184400.2.v4.1 annot-version=v4.1 ATGGAAGACGGCAACAGACTGCAAGTAGTAATGTTTCCATGGCTAGCCACGGGACATCTCATACCATTTCTCCAACTCTCCAAGCTCTTAGCTGAAAAGG GTCACAAAATCTTCTTTGTATCAACACCGAGGAACCTTAATAGGCTTCCTAAAATACCAAAACAACTATCTTCAGAAATTATTCTAGTATCTTTTCCCTT TCCTCATGTACCCAACTTACCATCCTGTGCAGAGTCATCTACAGACGTACCTTACACCAAACAACAGTTACTAAAGAAAGGCTTTGATTTGCTTGAACCA CCACTGACGACTTTCCTTGAATCCTCAAAACCAGATTGGATTTTCTACGATTATGCTTCTCACTGGCTACCATCCGTAGCAGCAAGGCTTGGTATCTCAT GTGCCTTCTTTAGTCTTTTCACTGCTGCATGTTTATCTTATATTGGGCCACCATCAGCTTTGATGACTATTGGAGATCCCCGGTCGAAAGCTGAGGACTT CACGGTCGTGCCCAAGTGGATCCCTTTTGAATCAGACCTTGTTTTCCGTTTGCATGAGGTAACAAAGTATGTGGAGAAAACGGAGGAAGATGAAACTGGA CCGTCGGATTTGATCCGGTTCGGTTTTGCAGCTGGAGGGAGTGATGTTGTGATCATTAGAAGCTCTCCCGAGTTTGAACCGGAGTGGTTCAATCTCTTAC ACGATCAGCTGTACAAAAAACCAATTATACCGGTCGGGTTTTTGCCTCCGATAGTCGAACATAACGAAGAAGATGATAATATTGATGGTCACGAGTGGAG TAATATCAAAGAGTGGTTGGATAAACAAAAGGTTCACTCAGTAGTTTATGTTGCCATAGGGACTGAGGCTTCTTTGAGTGGTGAAGAATTGAAAGAGTTA GCTCTTGGTTTGGAGAATTCAACGTTACCTTTCTTTTGGGTACTCAACAAAATACCTGGGTCAACTAAGAACGCGTTGGATATGCTACCAGATGGCTTTC AGGAGCGAGTCAAGAATCGTGGGATTATACATGGGGGATGGGCTCCACAGGTGAAAATACTGAGTCATGATTCAGTTGGGGGGTTTATGACTCACTGTGG TTGGAACTCCATCATTGAGGGGCTAACGTTTGGCCGAGTGTTGATTCTGCTTCCAATCCTAAATGAACAAGGGCTTAACTCAAGGTTGTTGCATGGAAAA AAGCTTGGGCTGGAGATACCAAGAAAGGAGCAAGATGGATCATTTACATGGGCATCAGTGGCCGAGTCAATGAGAACGGCAATGGTAGATGACTCGGGCG TATCGTGGAGAAACCGGGCACGGGAAATAAGATACTTGTTTGGGGACGTGGATAGGAATAACTGTTTTGTGGCAAGGCTTGTAAATTACCTTACGGAGAA TAAGAAGGCCCGGGTTCCATAA
AA sequence Show only first row Show all	>Potri.003G184400.2 pacid=42786681 polypeptide=Potri.003G184400.2.p locus=Potri.003G184400 ID=Potri.003G184400.2.v4.1 annot-version=v4.1 MEDGNRLQVVMFPWLATGHLIPFLQLSKLLAEKGHKIFFVSTPRNLNRLPKIPKQLSSEIILVSFPFPHVPNLPSCAESSTDVPYTKQQLLKKGFDLLEP PLTTFLESSKPDWIFYDYASHWLPSVAARLGISCAFFSLFTAACLSYIGPPSALMTIGDPRSKAEDFTVVPKWIPFESDLVFRLHEVTKYVEKTEEDETG PSDLIRFGFAAGGSDVVIIRSSPEFEPEWFNLLHDQLYKKPIIPVGFLPPIVEHNEEDDNIDGHEWSNIKEWLDKQKVHSVVYVAIGTEASLSGEELKEL ALGLENSTLPFFWVLNKIPGSTKNALDMLPDGFQERVKNRGIIHGGWAPQVKILSHDSVGGFMTHCGWNSIIEGLTFGRVLILLPILNEQGLNSRLLHGK KLGLEIPRKEQDGSFTWASVAESMRTAMVDDSGVSWRNRAREIRYLFGDVDRNNCFVARLVNYLTENKKARVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49690			UDP-Glycosyltransferase superf...		Potri.003G184400 [exp]	0	1
					Potri.005G239800 [exp]	2.82	0.9185
AT1G61590			Protein kinase superfamily pro...		Potri.003G105400 [exp]	4.24	0.9171
AT2G42760			unknown protein		Potri.011G069900 [exp]	5.74	0.9231
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	7.61	0.9289
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.016G038900 [exp]	11.83	0.9127
AT5G49015			Expressed protein (.1.2)		Potri.008G039901 [exp]	11.95	0.9127
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Potri.012G043200 [exp]	14.14	0.8969	MKK9.1
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	15.90	0.9026
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	19.74	0.9228
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.012G069000 [exp]	21.09	0.8832

Compare expression of checked genes

Potri.003G184400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.