Plant FIBer expression Database

Potri.003G185050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24100 392 / 2e-132 ASG1 ALTERED SEED GERMINATION 1, unknown protein
AT4G30780 385 / 4e-128 unknown protein
AT3G05770 123 / 2e-30 unknown protein
AT1G54300 112 / 2e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G041800
[exp]
865 / 0 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein
Potri.018G102800
[exp]
545 / 0 AT4G30780 501 / 1e-172 unknown protein
Potri.006G180500
[exp]
521 / 0 AT4G30780 503 / 2e-173 unknown protein
Potri.013G009000
[exp]
209 / 8e-61 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein
Potri.005G014600
[exp]
174 / 4e-48 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035819
[exp]
526 / 0 AT4G30780 514 / 3e-177 unknown protein
Lus10036602
[exp]
518 / 5e-180 AT4G30780 511 / 5e-176 unknown protein
Lus10041622
[exp]
462 / 2e-159 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein
Lus10024097
[exp]
451 / 7e-155 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein
Lus10010920
[exp]
165 / 9e-46 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein
Lus10029847
[exp]
156 / 2e-40 AT2G24100 160 / 6e-42 ALTERED SEED GERMINATION 1, unknown protein
Lus10029846
[exp]
141 / 3e-36 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein
Lus10020694
[exp]
134 / 9e-34 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein
Lus10007704
[exp]
72 / 4e-15 AT4G30780 74 / 1e-16 unknown protein
Lus10024256
[exp]
59 / 1e-09 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence
>Potri.003G185050.1 pacid=42786417 polypeptide=Potri.003G185050.1.p locus=Potri.003G185050 ID=Potri.003G185050.1.v4.1 annot-version=v4.1
ATGGTTCAGTTAATGAGTTCTTTAGGCGAAAAAACAGCAGTTGTGAAGCTGGAAGCAGCTGAGGATTCTTTAGAGGATCAACTCAGCCCACTTTTTAAAC
GTTCAAAGCTTGACCACCCTTCTTCACAGGTGATGAATCCAGATGGTGTAGCTTTCAATCCACTTGGAGAGCCAAGCCCGATTGGTTTGACACTGAAAAA
GAGCCCGTCTTTTCTGGATTTGATTCAAATGAAGTTATCTCAACAAAACACTAGTAATACTATGTTGTCAAAGAAGCCTGGTTCCGTTGCAGCCGATAAG
CTTAAAGCTTCGAACTTTCCTGCTTCATTTCTAAAAATAGGGAATTGGGAGTATAAGTCAAGGTATGAAGGGGATTTGGTGGCAAAGTGTTACTTTGCTA
AGCATAAACTTGTTTGGGAAGTGCTTGATGGTGGGCTTAAGAATAAGATTGAAATTCAGTGGTCAGATATTGTGGCAATCAAGGCAAATTTTCCTGATGA
TGGGCCTGAAACCTTGGATGTAGTGCTGGCTAGACAGCCCCTTTTCTTTAGAGAGACAAATCCACAACCTAGGAAGCATACTTTGTGGCAGGCAACATCA
GATTTTACTGGTGGACAAGCAAGCATACACAGGCAGCATTTTCTACATTGCCAGCAAGGCTTCATGGGAAAGCATTTTGAAAAGCTTGTTCAATGTGATC
CTCGTCTAAACTTTCTTAGTCAACAGCAAGAAATTGTATTAGAATCTCCATACTTTGAGCAAAGAGTTTCTGCATTCAGTGACTTGCATGAATCTGGCAA
AGGGCTTGATTCTGAAGTTGAGGACAAGACCACTGTTTTTTCTCTGCGGGAAGCAGGACAACCATCTGGAGTTCTTTTATCTTCCTTGAATAATGAATGT
CAAGGCTTCCTGTGTCAAACTCCTGAAAATATCTCCCATGAAACTTCTTCAACTAGCTTCGGAATGGAGACCCATGTATTTGAAGAAATCAGGAGCAACA
GAACAGGGGAACAGAAGTTGCCGAGCAACTGGGATCAAATTAAAGTGCCTGGACTTCATCCATCCATGTCAATGAGCGATCTAGTGAACCATATTGGACA
TTGCATTTCAGAACAGATGACCTCTGGCAACTCTATCCTCTGTGGTGGTGACATAAAGAGCAGTGACATTCTGGATGAAATTACCCAATACTTGCTTGGA
GACTCTCAAGTTACATCAGCCTCGGATGAGCAATCCCTCATGACAAGGGTCAATTCTCTTTGCTGCCTACTGCAGAAGGATCCTGGAACAGCCTGGGACT
TGCAGGGGAAGTGTCGTGACAATCTAGATATGGATCATGGTGGGAGAGTAGACGAAACTAATTCAGTTAGTGCATCAGAATGTCAAAGCAAACTTGCCGA
GGATTTTCCTGCACCTGAGGGAGAAGCTAGTAACGTTACCTGCTGCAAGCAAGCACCAGCCATGACGAGGAAGGACTCAGTTGGAGAACTGATGCTTAAT
CTTCCAAGGATTGCCTCTTTACCACATTTTTTATTCAATGTATAG
AA sequence
>Potri.003G185050.1 pacid=42786417 polypeptide=Potri.003G185050.1.p locus=Potri.003G185050 ID=Potri.003G185050.1.v4.1 annot-version=v4.1
MVQLMSSLGEKTAVVKLEAAEDSLEDQLSPLFKRSKLDHPSSQVMNPDGVAFNPLGEPSPIGLTLKKSPSFLDLIQMKLSQQNTSNTMLSKKPGSVAADK
LKASNFPASFLKIGNWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIVAIKANFPDDGPETLDVVLARQPLFFRETNPQPRKHTLWQATS
DFTGGQASIHRQHFLHCQQGFMGKHFEKLVQCDPRLNFLSQQQEIVLESPYFEQRVSAFSDLHESGKGLDSEVEDKTTVFSLREAGQPSGVLLSSLNNEC
QGFLCQTPENISHETSSTSFGMETHVFEEIRSNRTGEQKLPSNWDQIKVPGLHPSMSMSDLVNHIGHCISEQMTSGNSILCGGDIKSSDILDEITQYLLG
DSQVTSASDEQSLMTRVNSLCCLLQKDPGTAWDLQGKCRDNLDMDHGGRVDETNSVSASECQSKLAEDFPAPEGEASNVTCCKQAPAMTRKDSVGELMLN
LPRIASLPHFLFNV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.003G185050
[exp]
0 1
AT1G27300 unknown protein Potri.003G170700
[exp]
1.41 0.8591
AT3G26510 Octicosapeptide/Phox/Bem1p fam... Potri.008G186500
[exp]
4.24 0.7599
AT3G48530 KING1 SNF1-related protein kinase re... Potri.015G094700
[exp]
4.58 0.7521
AT2G19810 C3HZnF AtOZF1 Oxidation-related Zinc Finger ... Potri.018G058600
[exp]
5.65 0.7742
AT2G46680 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX ... Potri.002G176300
[exp]
6.00 0.7805 Pt-ATHB.4
AT5G52430 hydroxyproline-rich glycoprote... Potri.001G102200
[exp]
6.32 0.7633
AT1G13870 DRL1, AtKTI12 DEFORMED ROOTS AND LEAVES 1, c... Potri.008G094600
[exp]
6.48 0.7417 DRL1.1
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.013G028700
[exp]
6.92 0.7442
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.001G355100
[exp]
7.54 0.7240
AT1G14670 Endomembrane protein 70 protei... Potri.012G042300
[exp]
7.74 0.7499

Potri.003G185050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.