Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79720 523 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G10770 299 / 2e-96 Eukaryotic aspartyl protease family protein (.1) AT5G10760 223 / 3e-67 Eukaryotic aspartyl protease family protein (.1) AT1G01300 215 / 4e-64 Eukaryotic aspartyl protease family protein (.1) AT3G20015 214 / 8e-64 Eukaryotic aspartyl protease family protein (.1) AT1G25510 210 / 4e-62 Eukaryotic aspartyl protease family protein (.1) AT3G61820 201 / 1e-58 Eukaryotic aspartyl protease family protein (.1) AT3G59080 200 / 4e-58 Eukaryotic aspartyl protease family protein (.1.2) AT3G18490 195 / 2e-56 Eukaryotic aspartyl protease family protein (.1) AT2G03200 194 / 2e-56 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G041700 [exp] 833 / 0 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 283 / 4e-90 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 267 / 3e-84 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 262 / 6e-82 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 256 / 7e-80 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 241 / 3e-74 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 241 / 4e-74 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 226 / 1e-68 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 223 / 9e-67 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041621 [exp] 557 / 0 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 437 / 8e-151 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 295 / 5e-95 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 264 / 3e-82 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 234 / 2e-71 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 209 / 3e-62 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 188 / 2e-53 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020279 [exp] 183 / 2e-52 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 182 / 6e-52 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 182 / 6e-52 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.003G185175.1 pacid=42786649 polypeptide=Potri.003G185175.1.p locus=Potri.003G185175 ID=Potri.003G185175.1.v4.1 annot-version=v4.1 ATGGTGCAGGAAAAACCTGCTTTTCCTTCAAAACTCCTCCATCTTTCTCTTCTTGTTTTTCTCCTCACCATTTTGGATAATGGAGTTCAATGTTTTCGAG GGAAGAAAGTCCTCAGCATGCATAAATTCCAATGGAAACAGGAGAGTGATAGTTCAAGTTGCCTCTCCCAAAAATCAAGGTGGGAGAATGGTGCGGTGAT ATTGGAAATGAAGCACAAAGATTCTTGCTCAGGAAAGATCTTAGACTGGAATAAGAAGCTTCAAAAACGCTTGATCATGGATAACTTTCAGCTTCGATCG CTTCAATCTAGAATTAAAAACATCATTTTATCTGGAAATATTGATGATTCAGTGGATACTCAAATCCCATTAACTTCTGGTATAAGACTTCAGTCACTAA ACTACATAGTTACAGTGGAATTAGGTGGTCGAAAAATGACAGTGATTGTGGACACAGGAAGTGACTTGAGTTGGGTTCAATGTCAACCTTGCAATCGATG TTATAATCAACAAGACCCTGTTTTCAACCCTTCAAAATCTCCTTCATACCGAACAGTTCTATGCAATTCATTAACGTGTCGATCCCTACAGCTTGCAACT GGAAATTCAGGAGTTTGTGGGAGTAACCCTCCGACTTGTAACTATGTTGTTAACTATGGTGATGGGTCCTACACAAGCGGTGAGGTGGGTATGGAGCATC TTAATTTAGGAAACACTACAGTCAACAACTTCATATTTGGCTGTGGTAGGAAAAATCAAGGTCTATTTGGTGGAGCTTCAGGTCTTGTGGGATTGGGAAG GACTGATCTCTCTTTGATTTCTCAAATTTCACCCATGTTTGGAGGAGTTTTCTCCTATTGTTTGCCTACAACAGAAGCTGAGGCTTCAGGTTCACTAGTC ATGGGTGGAAATTCCTCGGTTTACAAAAACACAACTCCTATTTCATACACCAGAATGATTCACAATCCGCTGCTACCCTTCTATTTTCTCAACCTAACTG GCATTACTGTTGGTGGGGTAGAAGTACAAGCACCAAGTTTCGGTAAAGACAGAATGATAATTGATTCTGGGACGGTTATTTCAAGACTTCCTCCTTCAAT TTACCAGGCACTAAAGGCTGAGTTTGTGAAGCAATTTTCAGGTTATCCTTCTGCACCATCTTTTATGATTTTGGATAGTTGCTTCAACCTTAGTGGATAT CAAGAAGTTAAGATTCCAGACATAAAAATGTACTTCGAGGGAAGTGCTGAGCTCAATGTGGATGTAACCGGGGTTTTCTATTCTGTCAAGACTGATGCGT CTCAGGTCTGCTTGGCTATTGCAAGTCTCCCGTATGAAGATGAAGTTGGCATAATTGGGAATTATCAGCAGAAAAACCAGAGGATTATATATGATACCAA GGGATCCATGTTGGGATTTGCTGAAGAAGCTTGCAGTTTCTACTAG
AA sequence Show only first row Show all	>Potri.003G185175.1 pacid=42786649 polypeptide=Potri.003G185175.1.p locus=Potri.003G185175 ID=Potri.003G185175.1.v4.1 annot-version=v4.1 MVQEKPAFPSKLLHLSLLVFLLTILDNGVQCFRGKKVLSMHKFQWKQESDSSSCLSQKSRWENGAVILEMKHKDSCSGKILDWNKKLQKRLIMDNFQLRS LQSRIKNIILSGNIDDSVDTQIPLTSGIRLQSLNYIVTVELGGRKMTVIVDTGSDLSWVQCQPCNRCYNQQDPVFNPSKSPSYRTVLCNSLTCRSLQLAT GNSGVCGSNPPTCNYVVNYGDGSYTSGEVGMEHLNLGNTTVNNFIFGCGRKNQGLFGGASGLVGLGRTDLSLISQISPMFGGVFSYCLPTTEAEASGSLV MGGNSSVYKNTTPISYTRMIHNPLLPFYFLNLTGITVGGVEVQAPSFGKDRMIIDSGTVISRLPPSIYQALKAEFVKQFSGYPSAPSFMILDSCFNLSGY QEVKIPDIKMYFEGSAELNVDVTGVFYSVKTDASQVCLAIASLPYEDEVGIIGNYQQKNQRIIYDTKGSMLGFAEEACSFY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	0	1
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	2.82	0.7991	PtrWBC5-1
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	3.46	0.7892
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	6.63	0.7729
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	9.94	0.6687
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	15.65	0.7574
AT4G37820			unknown protein		Potri.002G112800 [exp]	15.96	0.6533
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	16.73	0.6560
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	17.43	0.6461
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	19.07	0.6369
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	28.10	0.5856

Compare expression of checked genes

Potri.003G185175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.