Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 535 / 0 Wall-associated kinase family protein (.1.2) AT1G69730 528 / 1e-178 Wall-associated kinase family protein (.1) AT4G31100 525 / 3e-177 wall-associated kinase, putative (.1) AT1G19390 524 / 4e-177 Wall-associated kinase family protein (.1) AT1G16130 522 / 6e-177 WAKL2 wall associated kinase-like 2 (.1) AT1G17910 521 / 2e-176 Wall-associated kinase family protein (.1) AT1G79680 516 / 3e-174 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G79670 499 / 6e-168 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16150 495 / 7e-166 WAKL4 wall associated kinase-like 4 (.1) AT4G31110 490 / 6e-164 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185750 [exp] 1086 / 0 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185850 [exp] 1045 / 0 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.003G185800 [exp] 1017 / 0 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 991 / 0 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G186200 [exp] 861 / 0 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185732 [exp] 787 / 0 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185688 [exp] 723 / 0 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 721 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.004G192500 [exp] 697 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 516 / 3e-175 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 486 / 2e-163 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10008105 [exp] 379 / 3e-122 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 379 / 3e-122 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10038077 [exp] 351 / 1e-110 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10013385 [exp] 346 / 5e-109 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 341 / 7e-107 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 319 / 2e-98 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 276 / 1e-87 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10013387 [exp] 264 / 3e-81 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF07645 [poplar] [flax] EGF_CA Calcium-binding EGF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.003G185644.1 pacid=42785471 polypeptide=Potri.003G185644.1.p locus=Potri.003G185644 ID=Potri.003G185644.1.v4.1 annot-version=v4.1 ATGCAGGTTGTGAAACTTGTCTCCCATGTTTCTTTCTTGTTATTAATGCTGATGTTTCAGCCAGCAACAGCGCAAGCACCGGCTGGTCTGGCAAAACCTA ATTGTTCGGACCGCTGTGGAAATATTAGCATTCCATACCCGTTCGGGATTGGAAAGGATTGCTACATGGAGGAATCTTTTGACGTTGAATGCAATGAAAC TTCCAAACCTCCTAGAGCTTTTTTACGCAGCATCAAAATGGAGTTGGTGAATATTACATTAGAAGGAGGTGCAGTTGTCAACGGTCCAGTGATATCCGTT GATTCTTCGGGCCGGCAAGAAGGTGTAACTGTGAATTTGGAAGGAACTCCTTTCCTCTTTTCCTATACCAATTATTTCATTGCAGTGGGTTGCAATACTC GTGCCGCTCTGTGGACAAAAAAGGGCACGGACGAACATGTTGGATGCGACTCAATTTGCTCCAACGCTAGTTCCATTAGTAATATTCGGTTTGGAAATAG TTCATGCTCTGGTAAGGACTGTTGTCAAGATATGTACTTGCCTCCCTCACTTCAGGTTTTCAATTCAACTGTCGTGTCAAAAGAGGGTAAACAAGGTAGT GACGGGCGTAAACTGGCCTTCCTAGCAGACACGAATTGGTTTTATAACAATATAAGGACTCCCCAAGAAATCAACAAATTGCTAAATAACAATAGTACTG TTCCTATGTCGCTGGCTTGGATACTAAATAACAATAGTTGGACATACAACCAAGATACAACCACGTATTGCTCCGGAACGCAAATTAATAGTACGTCGAC AATTATGACAGCCGGTTGTTCTTGCTCAGAAGGTTACGAGGGCAACCCTTACCTTCAATGCAGAGATGTTAATGAATGCAAGATCCCAGAGAAAAATACG TGCCAACGGATGCTCAAATGCGTGAATACACAAGGAGGGTTCAGATGCTTGAAGAAGAAGTTTTTCAAACGGAATGGTGGTCTCTTATTGCAGCAGCAAT TATCCTCAAGTGATGGTAGTGTTCAAAAGACAAAGATATTTAGTTCAAATGAGTTGGAAAAGGCGACTGATTATTTTAACGAGAGCAGAATACTTGGTCA TGGCGGCCAAGGCACCGTTTACAAGGGAATGTTAGCTGCAGGGACTATCGTTGCAGTTAAGAAGTCTAAGATAGTGGATGAAGATAAACTAGAAGAATTC ATCAACGAGGTTGTCATTCTTTCACAAATCAGTCACAGAAATGTGGTTAGGCTACTCGGATGTTGCCTGGAGACTGATGTTCCTCTGCTAGTCTATGAAT TCATTCCCAGTGGAACTCTTTTCCAATATCTCCATGAGCAAAACGAGGACTTTACGTTATCATGGGAGTTGCGGTTACGAATTGCCTCGGAAGCTGCAGG TGCGATATCCTATCTTCACTCGACAGCATCTATCCCGATTTATCACCGAGACATTAAGTCCACAAACATACTCTTAGATGAGAAATATAGAGCAAAAGTT TCAGATTTCGGAACTTCAAGATCAGTTTCCATCGATCAAACTCATCTGACCACCAAGGTGCAAGGTACTTTTGGTTACTTAGATCCAGAGTATTTTCGAA CCAGTCAATTAACAGAAAAGAGTGATGTTTATAGTTTTGGAGTAGTTCTCGTCGAGCTCTTAAGTGGGAAAAAACCTATTTTCTTAACCCATTCACTGGA AACCATGAGCTTAGCCGAACATTTCATTAAATTGATGGAAGATAGTAGACTCTTTGATATCATTGATGCTCAAGTTAAGGGGGATTGCAGTGAAGAGGAA GCCATAGTTATAGCAAATCTTGCAAAGAGATGTTTGAATTTGAATGGAAGAAACAGACCAACAATGAGAGAAGTTGCAATGGAATTGGAGGGGATTCTAT TATCACGTAACGGTATCAATATTCAACAAATTGGTGAAGTGGATAATTCATCGAGGTCGATTTCCCGCAGCAGTTTCGAGAGTGGTATAGATCTACCATT AGATTGCAAACCGTCGACTTCTTCTGAAACATGGTGA
AA sequence Show only first row Show all	>Potri.003G185644.1 pacid=42785471 polypeptide=Potri.003G185644.1.p locus=Potri.003G185644 ID=Potri.003G185644.1.v4.1 annot-version=v4.1 MQVVKLVSHVSFLLLMLMFQPATAQAPAGLAKPNCSDRCGNISIPYPFGIGKDCYMEESFDVECNETSKPPRAFLRSIKMELVNITLEGGAVVNGPVISV DSSGRQEGVTVNLEGTPFLFSYTNYFIAVGCNTRAALWTKKGTDEHVGCDSICSNASSISNIRFGNSSCSGKDCCQDMYLPPSLQVFNSTVVSKEGKQGS DGRKLAFLADTNWFYNNIRTPQEINKLLNNNSTVPMSLAWILNNNSWTYNQDTTTYCSGTQINSTSTIMTAGCSCSEGYEGNPYLQCRDVNECKIPEKNT CQRMLKCVNTQGGFRCLKKKFFKRNGGLLLQQQLSSSDGSVQKTKIFSSNELEKATDYFNESRILGHGGQGTVYKGMLAAGTIVAVKKSKIVDEDKLEEF INEVVILSQISHRNVVRLLGCCLETDVPLLVYEFIPSGTLFQYLHEQNEDFTLSWELRLRIASEAAGAISYLHSTASIPIYHRDIKSTNILLDEKYRAKV SDFGTSRSVSIDQTHLTTKVQGTFGYLDPEYFRTSQLTEKSDVYSFGVVLVELLSGKKPIFLTHSLETMSLAEHFIKLMEDSRLFDIIDAQVKGDCSEEE AIVIANLAKRCLNLNGRNRPTMREVAMELEGILLSRNGINIQQIGEVDNSSRSISRSSFESGIDLPLDCKPSTSSETW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.003G185644 [exp]	0	1
AT1G17910			Wall-associated kinase family ...		Potri.003G185732 [exp]	6.00	0.9914
AT1G59970			Matrixin family protein (.1)		Potri.008G027500 [exp]	11.35	0.9913
AT1G59970			Matrixin family protein (.1)		Potri.008G027975 [exp]	13.78	0.9908
AT1G59970			Matrixin family protein (.1)		Potri.008G027700 [exp]	16.97	0.9902	Pt-MMP.9
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G005150 [exp]	18.16	0.9905
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	20.04	0.9735
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014100 [exp]	20.83	0.9903
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219900 [exp]	24.73	0.9763
AT4G19390			Uncharacterised protein family...		Potri.014G039000 [exp]	27.34	0.9887
AT1G16260			Wall-associated kinase family ...		Potri.003G185800 [exp]	27.45	0.9892

Compare expression of checked genes

Potri.003G185644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.