Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 614 / 0 Wall-associated kinase family protein (.1.2) AT1G79670 606 / 0 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16130 603 / 0 WAKL2 wall associated kinase-like 2 (.1) AT1G69730 600 / 0 Wall-associated kinase family protein (.1) AT1G79680 598 / 0 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16120 590 / 0 WAKL1 wall associated kinase-like 1 (.1) AT1G16160 583 / 0 WAKL5 wall associated kinase-like 5 (.1) AT1G16150 576 / 0 WAKL4 wall associated kinase-like 4 (.1) AT1G19390 576 / 0 Wall-associated kinase family protein (.1) AT1G17910 572 / 0 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185700 [exp] 1271 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 939 / 0 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 921 / 0 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G186200 [exp] 877 / 0 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G040500 [exp] 790 / 0 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G186100 [exp] 787 / 0 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 785 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039200 [exp] 777 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038300 [exp] 765 / 0 AT1G16260 621 / 0.0 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 568 / 0 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 531 / 0 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 449 / 4e-148 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10008105 [exp] 392 / 7e-127 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 383 / 9e-124 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013385 [exp] 372 / 9e-119 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 362 / 1e-114 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 345 / 5e-108 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 278 / 3e-88 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 255 / 1e-75 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF07645 [poplar] [flax] EGF_CA Calcium-binding EGF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.003G185688.1 pacid=42786975 polypeptide=Potri.003G185688.1.p locus=Potri.003G185688 ID=Potri.003G185688.1.v4.1 annot-version=v4.1 ATGGAGAAAATGGTTTCGAAATTGGTGTTTAAAATGACTTTGCTGATGTTAATGTTTCAGTTAGCAAAAGCAGCAGCACCAGTAGCGAAGTTTGGTTGTC CAGATCGATGCGGAGACATTACCATTCCTTACCCTTTTGGAACTGGAAAAGACTGTTACAAGGACGAATGGTTCGCGGTTGAATGCAACAAAACCACCAA CCCTCCTAGAGCTTTTATAAGTCAAATCAATGTGGAGGTGCTGAATATTTCAGTTGAAACAGGATTGGCTACCGTCAAAAGTCCAGTAATATCCTTCAAT TGTACTGGCAGGAAAGATGGTGGATCTCTGAATCTCACTGGATCTCCCTTTGTTTTCTCCGATTTCTGGAATGTGTTCATTGCAGTAGGTTGTGATACTC GAGCTTTCATGAGCGGGATTGAGCCGCAAGTCCTCGGTTGCGTGCCTACATGCGGTAACCAGCGGAATAACGTTAGCTTGCAAGAAAATAATATGTGTTC AGGTCGAAATTGCTGTGAGGCTTCAATCCCTTCACTCCTTCAGGTTTTCAAACCGACATTAGTTTCTACTAACGTTGATCAAGGTAGAGAAGCATGCAAG CTAGCCGTTTTGGTGAATGAGACATGGTTTGCATCGAATATAAGTGATCCATTCGCACTGCAGCATATAGATTACGTTCCAACGGACTTGGGTTGGGTGA TGAACGTGAATTATTCTCATGATATTTCCATTTCTTGCATGTATTACAATGAATCCCTAAATTCTGAATGTGCGTGTCGGCGTGGATTTGAGGGTAACCC TTACCTTGAACTTGGTTGCATAGATGTTGATGAATGTAAGACCCCAGAGAAAAATACGTGTCAAGGGATGCTCAAATGCGTGAATACACGAGGAGGGTTT AGATGCGGGATAAATAAAATTTATATAATTATCATAGTTGTAGGATCAATCATCTTTATATTGGTACTGCTGTTTGGCCTTTGGTGGATATATAGACTTG TAAAGAAGAGGCAGAACAAGGAACTCAAAAAGAAATTCTTCAAACGTAACGGTGGGCTATTGTTACAGCAACAATTATCCACTAGTGATGGTAGCGTTCA GAAAACAAAAATATACAGTTCCAAGGAGTTGGAAGTAGCCACCGATGGTTTTAATGTGAACAGAATACTTGGAGAAGGTGGTCAAGGCACTGTTTACAAG GGAATGTTAACAGATGGAAGAATTATTGCTGTTAAAAAGTCCAAAGTCATTGATGAAGAAAATCTCGAAGAATTTATTAACGAGGTCGTCATTCTCTCAC AAATTAACCACAGAAATGTGGTTAAGTTGCTAGGTTGTTGCTTGGAGACTGAAGTTCCTATACTAGTATACGAATTCATTTCCAATGGAAATCTTTACAA GTATATCCATGTTCAAAGCGATGACTTCTTGTTATCTTGGGAAATGCGATTACGAATTGCCATTGAAGTTGCGGGAGCCCTTTCTTATCTACACTCGACA GCATCGATTCCAATTTATCACCGTGATATCAAGTCTACAAACATACTCCTAGATGAGAAATATAGAGCCACGATATCAGATTTTGGATCTTCAAGATCCA TTGCCATCGATCAAACTCACTTGACCACTCATGTGCAGGGTACTTTTGGCTACTTGGATCCAGAGTATTTCCAGTCTAGTCAATTTACAGAAAAAAGTGA TGTTTATAGCTTTGGAGTGGTTCTGGTTGAGCTTTTAAGTGGACAAAAACCAATATTTTCCGCTAGCCCAACAGAAAGTAGAAGTTTAGCCACGCATTTT ATCATGATGATGGAAGATAACAGGTTGTTTGATATTCTTGATGCTAGAGTCAAAGAGCATTGCCATAATGAAGAAGTTGTTGCTGTCGGCAATCTTGCAA GAAAATGCTTGAATTTGAATGGGAAAAATCGGCCAACAATGAAAGAAGTAACCACAGAGTTGGAGAGGATAATTAAAAAGGGATCAAATGTTCAACAAGA CACTCAAGAGAATGAAAATATCATGGTTGATCTCAGTATGCAATACATGGGATGCATTTCCGACATCAATAATGACCTGTGA
AA sequence Show only first row Show all	>Potri.003G185688.1 pacid=42786975 polypeptide=Potri.003G185688.1.p locus=Potri.003G185688 ID=Potri.003G185688.1.v4.1 annot-version=v4.1 MEKMVSKLVFKMTLLMLMFQLAKAAAPVAKFGCPDRCGDITIPYPFGTGKDCYKDEWFAVECNKTTNPPRAFISQINVEVLNISVETGLATVKSPVISFN CTGRKDGGSLNLTGSPFVFSDFWNVFIAVGCDTRAFMSGIEPQVLGCVPTCGNQRNNVSLQENNMCSGRNCCEASIPSLLQVFKPTLVSTNVDQGREACK LAVLVNETWFASNISDPFALQHIDYVPTDLGWVMNVNYSHDISISCMYYNESLNSECACRRGFEGNPYLELGCIDVDECKTPEKNTCQGMLKCVNTRGGF RCGINKIYIIIIVVGSIIFILVLLFGLWWIYRLVKKRQNKELKKKFFKRNGGLLLQQQLSTSDGSVQKTKIYSSKELEVATDGFNVNRILGEGGQGTVYK GMLTDGRIIAVKKSKVIDEENLEEFINEVVILSQINHRNVVKLLGCCLETEVPILVYEFISNGNLYKYIHVQSDDFLLSWEMRLRIAIEVAGALSYLHST ASIPIYHRDIKSTNILLDEKYRATISDFGSSRSIAIDQTHLTTHVQGTFGYLDPEYFQSSQFTEKSDVYSFGVVLVELLSGQKPIFSASPTESRSLATHF IMMMEDNRLFDILDARVKEHCHNEEVVAVGNLARKCLNLNGKNRPTMKEVTTELERIIKKGSNVQQDTQENENIMVDLSMQYMGCISDINNDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.003G185688 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	7.34	0.9969
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.001G375133 [exp]	10.09	0.9969
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	12.96	0.9969	NQR.1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375100 [exp]	14.28	0.9968
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Potri.002G091500 [exp]	16.43	0.9968
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.002G083800 [exp]	17.02	0.9794
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375000 [exp]	17.66	0.9968
					Potri.001G439900 [exp]	20.66	0.9967
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.001G375166 [exp]	21.63	0.9966
					Potri.015G034166 [exp]	23.45	0.9965

Compare expression of checked genes

Potri.003G185688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.