Plant FIBer expression Database

Potri.003G185710 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G185710.1 pacid=42784661 polypeptide=Potri.003G185710.1.p locus=Potri.003G185710 ID=Potri.003G185710.1.v4.1 annot-version=v4.1
ATGAATTCACCTTCAAAACTCAGAAGAAGTTTTTGCATGTTGAGTCAAATGCTAAAGATGAAATTAAATGTAACCATACAAATAAAGAGTAAATATCAAG
CAGGCAAATTCCCAGACATTCTGGTATATTGTTCACAACCAGGAAAACTAAATAACATGGTGCAGTATTCACAACCAGGAAAACTATGGAGATGGATTTG
TGTTTTTTGTGTACAAGAAGCTCTGTATTGGATGAATAGGAGCTCTGTTTTTGGTTCCTCCTGGTTGATGAAGGCTCCCCATTTCTTGCCTTTGTCCGTC
TCTTTTTATTGTAGAGCAAAGGTTGGAATTAACGTAGTTTAG
AA sequence
>Potri.003G185710.1 pacid=42784661 polypeptide=Potri.003G185710.1.p locus=Potri.003G185710 ID=Potri.003G185710.1.v4.1 annot-version=v4.1
MNSPSKLRRSFCMLSQMLKMKLNVTIQIKSKYQAGKFPDILVYCSQPGKLNNMVQYSQPGKLWRWICVFCVQEALYWMNRSSVFGSSWLMKAPHFLPLSV
SFYCRAKVGINVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G185710
[exp]
0 1
AT1G53708 RTFL9 ROTUNDIFOLIA like 9 (.1) Potri.003G073900
[exp]
14.49 0.8219
AT1G74500 bHLH TMO7, PRE3, ATB... TARGET OF MONOPTEROS 7, activa... Potri.015G063300
[exp]
23.68 0.8137
AT4G17340 TIP2;2, DELTA-T... tonoplast intrinsic protein 2;... Potri.003G077800
[exp]
31.24 0.8047 Pt-TIP2.5
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G164900
[exp]
34.20 0.8130
AT1G80100 AHP6 histidine phosphotransfer prot... Potri.001G191900
[exp]
40.39 0.7985 AHP6.1
AT5G10830 S-adenosyl-L-methionine-depend... Potri.007G103200
[exp]
63.78 0.7300
AT4G28650 Leucine-rich repeat transmembr... Potri.002G256500
[exp]
65.38 0.7595
AT1G14700 PAP3, ATPAP3 purple acid phosphatase 3 (.1.... Potri.008G139100
[exp]
65.87 0.7808 Pt-PAP8.3
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Potri.017G100200
[exp]
86.62 0.7711
AT4G14650 unknown protein Potri.010G081000
[exp]
87.97 0.6926

Potri.003G185710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.