Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79690 1216 / 0 ATNUDT3 nudix hydrolase homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185600 [exp] 1598 / 0 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1) Potri.003G185951 [exp] 1591 / 0 AT1G79690 1218 / 0.0 nudix hydrolase homolog 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026103 [exp] 1181 / 0 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1) Lus10024090 [exp] 932 / 0 AT1G79690 885 / 0.0 nudix hydrolase homolog 3 (.1) Lus10002329 [exp] 868 / 0 AT1G79690 800 / 0.0 nudix hydrolase homolog 3 (.1) Lus10041626 [exp] 0 / 1 AT1G79690 490 / 4e-166 nudix hydrolase homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain CL0126 [poplar] [flax] Peptidase_MA PF03571 [poplar] [flax] Peptidase_M49 Peptidase family M49
Representative CDS sequence Show only first row Show all	>Potri.003G185776.1 pacid=42786268 polypeptide=Potri.003G185776.1.p locus=Potri.003G185776 ID=Potri.003G185776.1.v4.1 annot-version=v4.1 ATGGAAGACGCTGCTGCTGCTGCATCATCAGCTGTAGTCGTGGAAGAAGAGCGCCTCGACGTTCTCAACAAAACCGGTCAAAAAACCGGCATTTCGAAGC CCAGAGGAGAAGTTCATAGAGATGGAGATTACCACAGAGCAGTTCACGTGTGGATTTACTCCGAAAGCACACAAGAATTGCTTCTTCAACGTCGCGCCGA TTGCAAGGATTCCTGGCCAGGCCAATGGGATATCTCAAGCGCTGGCCATATTTCTGCCGGCGATTCTTCACTTGTGTCCGCTCAGAGAGAGCTTCAGGAA GAGCTAGGCATTAGCCTTCCGAAGGACGCGTTTGAACTTATTTTTATTTATCTTCAAGAGTGTGTTATAAATGATGGGAAATTCATCAATAATGAGTTCA ATGATGTGTATCTTGTGACAACTGTAGATCCGATTCCTCTTGAAGCATTTACTCTTCAGGAAACAGAAGTATCTGCTGTTAAATACATTTCGTTCGAGGA ATATAGAAGCTTACTTGTCAAAGAAGATCCTGATTATGTGCCCTATGATGTAGATGAACAGTATGGCCAACTCTTTGAAATCATTATGAAAAGGTACACA GAGAACACTGTAGCGCGCAGTTTGAGTCTACAAAAGCAACTCTGTCGATATGCTTCTGTTTCTCTGGATGCTGAGCTGACAGGTCTATCAAATACAGACA GGAAGACTCTTGGTTTACTTATCAAGGCTGCAAAACTTATGGATGAAATATTCTACCTTCAGGTTTGGTACAGCAATCCAGCTCTAAGAGATTGGTTGAA GGAGCATGCTAGTGCATCAGAATTAGACAAGCTCAAATGGATGTATTATTCAATTAATAAGAGCCCCTGGTCCTGTCTTGATGAAAACGAGGCATTTTTA ACAACCACAGATTCAGCCATCAAGTTACTTCCTGAAGCCACGAAGCCAGTCAGTGGATGGAAGGGTCTGGAATATAAAGCAGCATTTCCCATGCTAAAAT CACCTGGTGCAAATTTTTACCCTCCAGATATGGACAAAAAGGAATTTAAATTATGGAATGACAGTCTGACAGAGAAAGAACAAAATGATGCAATGGGCTT TTTCACCGTCATCAAAAGACACAGTGAATTTAGTTTGGATTCTTCTTCACCTAATCATGCAGTTCATGGGACAAATCATTTAATGACTGCCCATGATCTA TATAGTGTTCCTTACTCAAAGGAGTATAACTCCTTCCTTAGAAAAGCTGCAGAACTATTGCATGAAGCTGGGGACTTGGCTGGCTCACCTAGTTTGAAGA GGTTACTACATAGCAAGGCTGACGCATTCCTCTCAAATGACTATTATGAATCAGATATAGCCTGGATGGAATTGGACTCCAAGCTGGACGTTACCATAGG TCCATATGAGACGTACGAGGATGCAATTTTTGGCTACAAGGCAACATTTGAAGCATTCATTGGTATCCGGGATGACAAAGCAACTGCTCAACTAAAATTG TTTGGTGATAATTTGCAGTTTTTGGAACAAAATCTTCCAATGGACAGTGCATACAAATCAAAAAATGTCAATGCTGCTCCCATTCGGGTCATCCGGCTTC TTTATAATGCAGGGGATGTAAAGGGTCCTCAAACTGTTGCTTTCAATTTACCAAATGATGAGCGTATAGTAAAAGATCGAGGAACTTCAATGGTCATGCT GAAGAATGTTTCAGAGGCAAAGTTCAAGCATATTCTTCAGCCCATAGCTGATGTTTGTATTAGCAAGGAACAAAAAGGATTGGTAGATTTTGAATCTTTC TTTACGCACACTATATGCCATGAGTGCTGCCATGGTATTGGGCCTCATACTATCACACTTCCAGATGGCCAAAAGTCAACAGTAAGAAAGGAGCTTCAAG AACTCCACTCTGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCCCTAAAGTTCTTAATCAACCAGGATTTACTTCCTAGGAGTATGGTAAA ATCTATGTATGTTTCATTCCTTGCGGGGTGCTTCCGGTCAGTTCGTTTTGGTTTAGAGGAAGCTCATGGGAAAGGACAAGCACTGCAATTTAACTGGATG TATGAGAAAGAAGCCTTCATCTTGCATCCTGATGAGACATTTTCTGTTGATTTTGCCAAGGTTGAAGAGGCTGTTGAAAGCTTGAGTAGGGAGATACTCA CCATACAGGCAAAAGGTGACAAGGAGGCTGCAGATTTGCTGTTACAGAAATACTGTAAAATGACACGGCCATTGAAACATGCTCTGGAAAAATTAGAGAG TGTTCAGGTCCCTGTGGATATATATCCCATATTTTCCACTGTTAATGAAATATCAGAGTAA
AA sequence Show only first row Show all	>Potri.003G185776.1 pacid=42786268 polypeptide=Potri.003G185776.1.p locus=Potri.003G185776 ID=Potri.003G185776.1.v4.1 annot-version=v4.1 MEDAAAAASSAVVVEEERLDVLNKTGQKTGISKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDSSLVSAQRELQE ELGISLPKDAFELIFIYLQECVINDGKFINNEFNDVYLVTTVDPIPLEAFTLQETEVSAVKYISFEEYRSLLVKEDPDYVPYDVDEQYGQLFEIIMKRYT ENTVARSLSLQKQLCRYASVSLDAELTGLSNTDRKTLGLLIKAAKLMDEIFYLQVWYSNPALRDWLKEHASASELDKLKWMYYSINKSPWSCLDENEAFL TTTDSAIKLLPEATKPVSGWKGLEYKAAFPMLKSPGANFYPPDMDKKEFKLWNDSLTEKEQNDAMGFFTVIKRHSEFSLDSSSPNHAVHGTNHLMTAHDL YSVPYSKEYNSFLRKAAELLHEAGDLAGSPSLKRLLHSKADAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQLKL FGDNLQFLEQNLPMDSAYKSKNVNAAPIRVIRLLYNAGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKHILQPIADVCISKEQKGLVDFESF FTHTICHECCHGIGPHTITLPDGQKSTVRKELQELHSALEEAKADIVGLWALKFLINQDLLPRSMVKSMYVSFLAGCFRSVRFGLEEAHGKGQALQFNWM YEKEAFILHPDETFSVDFAKVEEAVESLSREILTIQAKGDKEAADLLLQKYCKMTRPLKHALEKLESVQVPVDIYPIFSTVNEISE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Potri.003G185776 [exp]	0	1
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Potri.003G185951 [exp]	1.41	0.9689
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Potri.003G185600 [exp]	2.00	0.9362
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.011G065900 [exp]	7.21	0.7951
AT5G53730			Late embryogenesis abundant (L...		Potri.015G002400 [exp]	7.93	0.8450
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.017G074600 [exp]	23.66	0.8401	CLE25.1
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	35.63	0.8207
AT5G45540			Protein of unknown function (D...		Potri.015G107900 [exp]	37.06	0.8159
AT2G46630			unknown protein		Potri.002G175400 [exp]	43.35	0.8145
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	43.79	0.8150
AT5G25340			Ubiquitin-like superfamily pro...		Potri.006G255500 [exp]	49.56	0.7943

Compare expression of checked genes

Potri.003G185776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.