Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2) AT1G69730 531 / 4e-179 Wall-associated kinase family protein (.1) AT1G16130 517 / 2e-174 WAKL2 wall associated kinase-like 2 (.1) AT1G17910 516 / 6e-174 Wall-associated kinase family protein (.1) AT4G31100 513 / 2e-172 wall-associated kinase, putative (.1) AT1G19390 513 / 3e-172 Wall-associated kinase family protein (.1) AT1G79680 511 / 8e-172 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G79670 505 / 1e-169 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16120 490 / 3e-164 WAKL1 wall associated kinase-like 1 (.1) AT1G16150 492 / 4e-164 WAKL4 wall associated kinase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185850 [exp] 1235 / 0 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.003G185750 [exp] 1214 / 0 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185644 [exp] 1006 / 0 AT1G16260 536 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 897 / 0 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185732 [exp] 888 / 0 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G186200 [exp] 805 / 0 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.004G192500 [exp] 731 / 0 AT1G16260 525 / 2e-177 Wall-associated kinase family protein (.1.2) Potri.003G186100 [exp] 696 / 0 AT1G16260 625 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 684 / 0 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 521 / 1e-176 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 501 / 8e-169 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 391 / 1e-125 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10004504 [exp] 384 / 5e-124 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 384 / 1e-123 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10013385 [exp] 339 / 7e-106 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 331 / 1e-102 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 316 / 9e-97 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 282 / 1e-89 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10032741 [exp] 268 / 3e-79 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF07645 [poplar] [flax] EGF_CA Calcium-binding EGF domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.003G185800.2 pacid=42787077 polypeptide=Potri.003G185800.2.p locus=Potri.003G185800 ID=Potri.003G185800.2.v4.1 annot-version=v4.1 ATGCAGGTTGTGAAACTTGTCTCCCTTTTTTCTTTCTTGCTATTAATGCTGGTGTTTCAGCCAGCATCGGCGCGAGCACCGGCTGGTCTGGCAAAACCTA ATTGTTCGGACCACTGTGGAAATATTAGCATTCCATACCCGTTCGGGATTGGAAAGGATTGCTACATGGAGGAATCTTTTGACGTTGAATGCGATGAAAC TTCCAATCCTCCTAGAGCTATTTTACGTAGCATCAAAATGGAGTTGGTGAATTTTACAATAGGAAGAGGTGCAGTTGTCAAGGGTCCAGTGATATCTCGA TCCGTTGAATCTCTGGGCCGGCAAGAAGTTCTACCTTTGAATTTGGAAGGAACTCCTTTCACCCCATATTACAATTATTTCATTGCAGTGGGCTGCAATA CTCGAGCCAGTTTGTGGACAAAAAATGGCTCGACCGAACATGTTGGATGCGACTCAATTTGCTCCAACGGTAGTTCCATTAGTAATATTCGGCTTGAAAT TGGTGCATGCTCTGGTAAGGACTGTTGTCAAGATATGTACTGGCCTCCCTCACTTCAGGTTTTCAATTCAAGTTTCGAGTTAATAGAGAGTAAACAAGGA AGTTACGGGCGTATACTGGCCTTCCTAGCAGACACGGATTGGTTTGATTCCAAAATATGGAGTACCCAAGATATCAACAAATTGCCAAGTACTGTTCCTA TGTTGCTTGGTTGGATACTAAATAATAATAGTTGGACATACAACGAAGATACCATGGATTGCTACGTAACGCGAATAAATAGTACGACAAATATGACAGC CGGACGTTGTTCTTGCTCAGAAGGTTATGAGGGCAACCCTTACCTTCAATGCAGAGACATTGATGAATGTGAAGACCGAAACAGTACTTGCCATGGATTG ATGACAAGATGTGTGAATACAAAAGGGTCCTACAAATGCGAACTTCATCCTTTATGGTTTACTATTCTAGTTATCGGTCTGGCCCTTGGAGTACTGTTCT TGCTCATTGGTGCTTGGTGGATGTCCAAACTTATCAAACGAAGGAAGTGCATTCAGTTGAAGAAGAAGTTTTTCAAACGGAATGGTGGTCTCTTATTGCA GCAACAATTATCCTCAAGTGATGGTAGTGTTCATAAGACAAAAATATGCAGTTCAAATGAGTTGGAAAAGGCGACCGATTTTTTTAATGAGAACAGAATA CTTGGTCATGGCGGCCAGGGAACCGTTTACAAGGGAATGTTAGCTGATGGGAGTATTGTTGCAGTTAAGAAGTCTACAATAGTGGATGAAGAAAAACTAG AAGAATTCATCAACGAGGTTGTCATTCTTTCACAAATCAGTCACAGAAATGTGGTTAGGCTACTTGGATGTTGCCTGGAGACTGATGTTCCTCTGCTAGT CTATGAATTCATTCCCAACGGAACTCTTTCCCAATATCTCCATGAGCAAAACGAGGACTTTACGTTATCATGGGAATCGCGGTTACGAATCGCCTCGGAA GCTGCAGGTGCGATATCCTACCTTCACTCGACAGCATCTATCCCGATTTATCACCGAGACATTAAGTCCACAAACATACTCTTAGATGAGAAATATAGAG CAAAAGTTTCAGATTTCGGAACTTCAAGATCAGTTTCCATTGATCAAACTCATCTGACCACCAAGGTGCAAGGTACCTTTGGTTACTTAGATCCAGAATA TTTTCGAACCAGTCAATTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTAGTTCTCGTGGAGCTCTTAAGTGGGAAAAAAACAATTTTCTTAACCCAT TCACTGGAAACCATGAGCTTAGTCGAACATTTCATTGATTTGATGGAAGATGGTAGACTCTTTGATATCATTGATGCTCAGGTTAAGGGGGATTGCACTG AAGAGGAAGCCATAGTTATAGCGAATCTTGCAAAGAGATGTCTGGATTTGAATGGAAGAAACCGGCCAACAATGAGAGAAGTTGCAATGGAATTGGAGGG GATTCTATTATCACGAAAGGGTATCAATGTTCAACAAATTGTTGAAGTGGATAGTTCATTTAGGTCGATTTCCTGCAGCAGTTTTGAGATTGGTATAGAT CTACCATTAGATTGCAAACCGTCGACTTCTTCTGAAACATGGTGA
AA sequence Show only first row Show all	>Potri.003G185800.2 pacid=42787077 polypeptide=Potri.003G185800.2.p locus=Potri.003G185800 ID=Potri.003G185800.2.v4.1 annot-version=v4.1 MQVVKLVSLFSFLLLMLVFQPASARAPAGLAKPNCSDHCGNISIPYPFGIGKDCYMEESFDVECDETSNPPRAILRSIKMELVNFTIGRGAVVKGPVISR SVESLGRQEVLPLNLEGTPFTPYYNYFIAVGCNTRASLWTKNGSTEHVGCDSICSNGSSISNIRLEIGACSGKDCCQDMYWPPSLQVFNSSFELIESKQG SYGRILAFLADTDWFDSKIWSTQDINKLPSTVPMLLGWILNNNSWTYNEDTMDCYVTRINSTTNMTAGRCSCSEGYEGNPYLQCRDIDECEDRNSTCHGL MTRCVNTKGSYKCELHPLWFTILVIGLALGVLFLLIGAWWMSKLIKRRKCIQLKKKFFKRNGGLLLQQQLSSSDGSVHKTKICSSNELEKATDFFNENRI LGHGGQGTVYKGMLADGSIVAVKKSTIVDEEKLEEFINEVVILSQISHRNVVRLLGCCLETDVPLLVYEFIPNGTLSQYLHEQNEDFTLSWESRLRIASE AAGAISYLHSTASIPIYHRDIKSTNILLDEKYRAKVSDFGTSRSVSIDQTHLTTKVQGTFGYLDPEYFRTSQLTEKSDVYSFGVVLVELLSGKKTIFLTH SLETMSLVEHFIDLMEDGRLFDIIDAQVKGDCTEEEAIVIANLAKRCLDLNGRNRPTMREVAMELEGILLSRKGINVQQIVEVDSSFRSISCSSFEIGID LPLDCKPSTSSETW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.003G185800 [exp]	0	1
AT1G17910			Wall-associated kinase family ...		Potri.003G185732 [exp]	4.58	0.9955
AT1G59970			Matrixin family protein (.1)		Potri.008G027500 [exp]	4.89	0.9979
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G005150 [exp]	6.70	0.9978
					Potri.015G125300 [exp]	7.21	0.9948
AT1G16260			Wall-associated kinase family ...		Potri.003G185750 [exp]	8.36	0.9975
AT1G35210			unknown protein		Potri.005G161700 [exp]	8.48	0.9960
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	9.48	0.9976
AT1G30760			FAD-binding Berberine family p...		Potri.001G463300 [exp]	10.95	0.9922
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	11.31	0.9974
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014100 [exp]	11.40	0.9971

Compare expression of checked genes

Potri.003G185800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.