Plant FIBer expression Database

Potri.003G185951 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79690 1219 / 0 ATNUDT3 nudix hydrolase homolog 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G185600
[exp]
1591 / 0 AT1G79690 1216 / 0.0 nudix hydrolase homolog 3 (.1)
Potri.003G185776
[exp]
1590 / 0 AT1G79690 1214 / 0.0 nudix hydrolase homolog 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026103
[exp]
1178 / 0 AT1G79690 1136 / 0.0 nudix hydrolase homolog 3 (.1)
Lus10024090
[exp]
930 / 0 AT1G79690 885 / 0.0 nudix hydrolase homolog 3 (.1)
Lus10002329
[exp]
870 / 0 AT1G79690 800 / 0.0 nudix hydrolase homolog 3 (.1)
Lus10041626
[exp]
0 / 1 AT1G79690 490 / 4e-166 nudix hydrolase homolog 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
CL0126 Peptidase_MA PF03571 Peptidase_M49 Peptidase family M49
Representative CDS sequence
>Potri.003G185951.1 pacid=42786447 polypeptide=Potri.003G185951.1.p locus=Potri.003G185951 ID=Potri.003G185951.1.v4.1 annot-version=v4.1
ATGGAAGACGCTGCTGCTGCTGCATCATCAGCTGTAGTCGTGGAAGAAGAGCGCCTCGACGTTCTCAACAAAACCGGTCAAAAAACCGGCATTTCGAAGC
CCAGAGGAGAAGTTCATAGAGATGGAGATTACCACAGAGCAGTTCACGTGTGGATTTACTCCGAAAGCACACAAGAATTGCTTCTTCAACGTCGCGCCGA
TTGCAAGGATTCCTGGCCAGGCCGATGGGATATCTCAAGCGCCGGCCATATTTCTGCTGGCGATTCTTCACTTGTGTCCGCTCAGAGAGAGCTTCAGGAA
GAGCTAGGCATTAGCCTTCCAAAGGATGCGTTTGAACATATTTTTATTTATCTTCAAGAGTGTGTTATAAATGATGGGAAATTCATCAATAATGAGTTCA
ATGATGTGTATCTTGTGACAACTGTAGATCCGATTCCTCTTGAAGCATTTACTCTTCAGGAAACAGAAGTATCTGCTGTTAAATACATTTCGTTCGAGGA
ATATAGAAGCTTACTTGTCAAAGAAGATCCTGATTATGTGCCCTATGATGTAGATGAACAGTATGGCCAACTCTTTGAAATCATTAGGAAAAGGTACACA
GAGAATACTGTAGCGCGCAGTTTGAGTCTACAAAAGCAACTCTGTCGATATGCTTCTGTTTCTCTGGATGCTGAGTTGACAGGTCTATCAAATACAGACA
GCAAGACTCTTGGTTTACTTATCAAGGCTGCAAAACTTATGGATGAAATATTCTACCTTCAGGTTTGGTACAGCAATCCAGCTCTAAGAGATTGGTTGAA
GGAGCATGCTAGTGCATCAGAATTAGACAAGCTCAAATGGATGTATTATTCAATTAATAAGAGCCCCTGGTCCTGTCTTGATGAAAACGAGGCATTTTTA
ACAACCACAGATTCAGCCATCAAGTTACTTCCTGAAGCCACGAAGCCAGTCAGTGGATGGAAGGGTCTGGAATATAAAGCAGCGTTTCCCATGCTAAAAC
CACCTGGTGCAAATTTTTACCCTCCAGATATGGACAAAAAGGAATTTAAATTATGGAATGACAGTCTGACAGAGAAAGAACAAAATGATGCAATGGGCTT
TTTCACCGTCATCAAAAGACACAGTGAATTTAGTTTGGATTCTTCTTCACCTAATCATGCAGTTCATGGGACAAATCATTTAATGACTGCCCATGATCTA
TATAGTGTTCCTTACTCAAAGGAGTATAACTCCTTCCTTAGAAAAGCTGCAGAACTATTGCATGAAGCTGGGGACTTGGCTGGCTCACCTAGTTTGAAGA
GGTTACTACATAGCAAGGCTGACGCATTCCTCTCAAATGACTATTATGAATCAGATATAGCCTGGATGGAATTGGACTCTAAGCTGGACATTACCATAGG
TCCATATGAGACGTACGAGGATGCAATTTTTGGCTACAAGGCAACATTTGAAGCATTCATTGGTATCCGGGATGACAAAGCAACTGCTCAACTAAAATTG
TTTGGTGATAATTTGCAGTTTTTGGAACAAAATCTTCCAATGGACAGTGCATACAAATCAAAAAATGTCAATGCTGCTCCCATTCGGGTCATCCGGCTTC
TTTATAATGCAGGGGATGTAAAGGGTCCTCAAACTGTTGCTTTCAATTTACCAAATGATGAGCGTATAGTAAAAGATCGAGGAACTTCAATGGTCATGCT
GAAGAATGTTTCAGAGGCAAAGTTCAAGCATATTCTTCAGCCCATAGCTGATGTTTGTATTAGCAAGGAACAAAAAGGATTGGTAGATTTTGAATCTTTC
TTTACGCACACTATATGCCATGAGTGCTGCCATGGTATTGGGCCTCATACTATCACACTTCCAGATGGCCAAAAGTCAACAGTAAGAAAGGAGCTTCAAG
AACTCCACTCTGCTTTGGAAGAAGCAAAAGCTGATATAGTTGGCCTTTGGGCCCTAAAGTTCTTAATCAACCAGGATTTACTTCCTAGGAGTATGGTAAA
ATCTATGTATGTTTCATTCCTTGCGGGGTGCTTCCGGTCAGTTCGTTTTGGTTTAGAGGAAGCTCATGGGAAAGGACAAGCACTGCAATTTAACTGGATG
TATGAGAAAGAAGCCTTCATCTTGCATCCTGATGAGACATTTTCTGTTGATTTTGCCAAGGTTGAAGAGGCTGTTGAAAGCTTGAGTAGGGAGATACTCA
CCATACAGGCAAAAGGTGACAAGGAGGCTGCAGATTTGCTGTTACAGAAATACTGTAAAATGACACGGCCATTGAAACATGCTCTGGAAAAATTAGAGAG
TGTTCAGGTCCCTGTGGATATATATCCCATATTTTCCACTGTTAATGAAATATCAGAGTAA
AA sequence
>Potri.003G185951.1 pacid=42786447 polypeptide=Potri.003G185951.1.p locus=Potri.003G185951 ID=Potri.003G185951.1.v4.1 annot-version=v4.1
MEDAAAAASSAVVVEEERLDVLNKTGQKTGISKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGRWDISSAGHISAGDSSLVSAQRELQE
ELGISLPKDAFEHIFIYLQECVINDGKFINNEFNDVYLVTTVDPIPLEAFTLQETEVSAVKYISFEEYRSLLVKEDPDYVPYDVDEQYGQLFEIIRKRYT
ENTVARSLSLQKQLCRYASVSLDAELTGLSNTDSKTLGLLIKAAKLMDEIFYLQVWYSNPALRDWLKEHASASELDKLKWMYYSINKSPWSCLDENEAFL
TTTDSAIKLLPEATKPVSGWKGLEYKAAFPMLKPPGANFYPPDMDKKEFKLWNDSLTEKEQNDAMGFFTVIKRHSEFSLDSSSPNHAVHGTNHLMTAHDL
YSVPYSKEYNSFLRKAAELLHEAGDLAGSPSLKRLLHSKADAFLSNDYYESDIAWMELDSKLDITIGPYETYEDAIFGYKATFEAFIGIRDDKATAQLKL
FGDNLQFLEQNLPMDSAYKSKNVNAAPIRVIRLLYNAGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKHILQPIADVCISKEQKGLVDFESF
FTHTICHECCHGIGPHTITLPDGQKSTVRKELQELHSALEEAKADIVGLWALKFLINQDLLPRSMVKSMYVSFLAGCFRSVRFGLEEAHGKGQALQFNWM
YEKEAFILHPDETFSVDFAKVEEAVESLSREILTIQAKGDKEAADLLLQKYCKMTRPLKHALEKLESVQVPVDIYPIFSTVNEISE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79690 ATNUDT3 nudix hydrolase homolog 3 (.1) Potri.003G185951
[exp]
0 1
AT1G79690 ATNUDT3 nudix hydrolase homolog 3 (.1) Potri.003G185600
[exp]
1.00 0.9816
AT1G79690 ATNUDT3 nudix hydrolase homolog 3 (.1) Potri.003G185776
[exp]
1.41 0.9689
AT3G28455 CLE25 CLAVATA3/ESR-RELATED 25 (.1) Potri.017G074600
[exp]
11.61 0.8907 CLE25.1
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.017G053000
[exp]
14.14 0.8880
AT1G29160 DOF AtDof1. 5 Dof-type zinc finger DNA-bindi... Potri.011G065900
[exp]
18.97 0.7814
Potri.018G104500
[exp]
20.04 0.8778
AT3G18670 Ankyrin repeat family protein ... Potri.005G057900
[exp]
22.47 0.8801
AT1G74720 QKY QUIRKY, C2 calcium/lipid-bindi... Potri.016G113800
[exp]
24.24 0.7706
AT3G18670 Ankyrin repeat family protein ... Potri.011G015700
[exp]
27.14 0.8693
AT4G37445 unknown protein Potri.007G051200
[exp]
29.79 0.8714

Potri.003G185951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.