Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 625 / 0 Wall-associated kinase family protein (.1.2) AT1G79670 614 / 0 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16130 612 / 0 WAKL2 wall associated kinase-like 2 (.1) AT1G19390 607 / 0 Wall-associated kinase family protein (.1) AT1G16120 606 / 0 WAKL1 wall associated kinase-like 1 (.1) AT1G69730 595 / 0 Wall-associated kinase family protein (.1) AT1G79680 587 / 0 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G16150 587 / 0 WAKL4 wall associated kinase-like 4 (.1) AT1G17910 580 / 0 Wall-associated kinase family protein (.1) AT4G31100 574 / 0 wall-associated kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185688 [exp] 795 / 0 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040000 [exp] 793 / 0 AT1G79670 604 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 775 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G038525 [exp] 757 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185622 [exp] 757 / 0 AT1G16260 551 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 753 / 0 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039900 [exp] 750 / 0 AT1G16130 597 / 0.0 wall associated kinase-like 2 (.1) Potri.001G039200 [exp] 745 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185850 [exp] 745 / 0 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034085 [exp] 543 / 0 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 518 / 4e-175 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 450 / 4e-148 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10008105 [exp] 390 / 7e-126 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 377 / 7e-121 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013385 [exp] 362 / 2e-114 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 353 / 1e-110 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013384 [exp] 342 / 1e-106 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 271 / 3e-85 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 262 / 5e-78 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0001 [poplar] [flax] EGF PF07645 [poplar] [flax] EGF_CA Calcium-binding EGF domain CL0001 [poplar] [flax] PF08488 [poplar] [flax] WAK Wall-associated kinase CL0001 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.003G186100.1 pacid=42786197 polypeptide=Potri.003G186100.1.p locus=Potri.003G186100 ID=Potri.003G186100.1.v4.1 annot-version=v4.1 ATGAAAATGAGATCCATATTTCGAATCAGCCTCTTACTATTGCCAATATTATTTCAGTTAGCAACAGCTGCACCACCCGTGACAAAGCCTGGATGTCAAA ACCGTTGTGGAAACATCAGCATTCCTTACCCCTTTGGAACTGCACAAGATTGCTATGCAAATGAAATGTTCAAGATTGTATGCAGGGAAACTACCAATGA GTCAGCTCCAAGAGCTTTTATTAGCATGATCAATATGGAGGTTCTGAATATTACAGATGGTGCAGCAATTGTCAACGGTCCAATAATGTCCTCCAATTGC TCTGACAGGCAATCCAATCTACCTGCTCTGAATTTGACGGGAAGTCCCTTCTTTTTCTCCTTTGGTAATGTGTTCACTGCAGTGGGTTGCAACGTCCGCG CGTTGTTGACAGGGATAGGCCGCCAAGTTGTCGGGTGCGACTCGACTTGCAGTGCTGACTCTAATCAGAAAACTCTTCTTTACGGGCAAGAAATTAACAG TCTATGTGCTGATGGAAACTGCTGTGTGGCAAGAGCACCTTACCGGATGCAGGTTTTTCAGCCAAGTTTGGATACAAAAAATGGCAGTGAAGACAGCAGT GGATGCAAGTTAGCTTTCCTAACAGACGAAACAAATTTTTCGTTTCTCAATATAACCAATCCGCAAGCGCTGCAGGGTTGGAGATCTGTTCCACTGGTGC TTGCCTGGATGATGGATTACAGCATTTGGAGATATGATAAAAGTACCATGGATTGCAAGTACTTCCTTTATGAGTCATCTGTGAGTAACGTTTCAGGATA TGAATGTTCTTGCAGTAACGGCTATGAAGGCAACCCTTACCTTGGATGCACAGATATTAATGAATGCAAAGACCCAAATCGACATTCGTGCCTGGGGATA ACAAAATGTGTGAATACACTGGGATCATACAAATGCGAGGTCAATAAGTATTGGATCGTCCCAATACTTGTAGTTGTTATCGCTGGAATATTGTCATTGC TTGCTGGCATATCGTGGTTATACAAACTAGCGAAGAAAAGAAAAAACATAGAACTTAAAAGGAAATTCTTCAAACGAAATGGTGGTTTATTATTACAGCA GCAGTTATCCTCAAATCATGGCAGTGTTCAAAAAACAAAGATATTTACTTCAAAAGAGTTGGAGACAGCCACTGATCGTTTTAATGAAAATAGAATACTT GGTCAAGGTGGACAAGGCACGGTTTACAAGGGGATGTTAGAAGATGGAAGAATCGTTGCTGTTAAAAGGTCCACAATAGTGGGTGAAGAAAAGCTCGAGG AGTTTATTAATGAGGTTGTCATTCTTTCACAAATTAATCATAGGAATGTGGTTAAGTTATTCGGATGTTGCTTGGAGACTGAAGTTCCTCTCCTGGTCTA TGAATTCATTTCCAATGGAAATCTTTTCCAGTATCTGCATAATTTTTACCAGAACGAGGACTTCATATTATCATGGGAAATGCGATTACAGATTGCCATT GAAGTTGCTGGAGCACTTTCCTATTTACATTCGGCAGCATCCATTCCAATTTATCACCGTGACATTAAGTCTGCAAATATACTCTTGGATGACAAATATA GAGCAAAGGTTTCAGATTTTGGATCTTCAAGATCAATGGCTATTGATCAAACTCATTTGACCACTAATGTGCAGGGCACTTTTGGTTATTTAGACCCGGA ATACTTCCAATCTAGTCAATTTACGGACAAGAGTGATGTTTATAGCTTTGGTGTAGTCCTCGTCGAGCTCTTAAGTGGGAAAAAACCAATTATATCATCA ACTTCACAAGAAACGAGAAGTTTGGCCACACATTTTATTGTTCTGATGGAAGAGAACAGACTCTTTGATATTCTTGATGTCCAAGTTAAGGAGGATTGCC TTGAGGAGGAAATAATGGCTGTAGCAAATCTTGCAAAAAGATGCTTGAATGTGAGCAGAAAACATCGACCAACAATGAAAGAGGTCTCAGCCGAGTTGGA GAGGATTGGGTTGTTGCATAGAAAGTCAATTGTTCAGCAAAATGAAGAAGACACTAATGAGAAAAGTACCATGGTTGAACGTCTCTGCAACTGGGATGCA GTTCCTATCTCAGCTACCTGTGATTTTGACAATGCTAGATCAGTTCAATCAACAGTTGCCGAACCATTGATTACTTACAACACCTTATGA
AA sequence Show only first row Show all	>Potri.003G186100.1 pacid=42786197 polypeptide=Potri.003G186100.1.p locus=Potri.003G186100 ID=Potri.003G186100.1.v4.1 annot-version=v4.1 MKMRSIFRISLLLLPILFQLATAAPPVTKPGCQNRCGNISIPYPFGTAQDCYANEMFKIVCRETTNESAPRAFISMINMEVLNITDGAAIVNGPIMSSNC SDRQSNLPALNLTGSPFFFSFGNVFTAVGCNVRALLTGIGRQVVGCDSTCSADSNQKTLLYGQEINSLCADGNCCVARAPYRMQVFQPSLDTKNGSEDSS GCKLAFLTDETNFSFLNITNPQALQGWRSVPLVLAWMMDYSIWRYDKSTMDCKYFLYESSVSNVSGYECSCSNGYEGNPYLGCTDINECKDPNRHSCLGI TKCVNTLGSYKCEVNKYWIVPILVVVIAGILSLLAGISWLYKLAKKRKNIELKRKFFKRNGGLLLQQQLSSNHGSVQKTKIFTSKELETATDRFNENRIL GQGGQGTVYKGMLEDGRIVAVKRSTIVGEEKLEEFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFISNGNLFQYLHNFYQNEDFILSWEMRLQIAI EVAGALSYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGSSRSMAIDQTHLTTNVQGTFGYLDPEYFQSSQFTDKSDVYSFGVVLVELLSGKKPIISS TSQETRSLATHFIVLMEENRLFDILDVQVKEDCLEEEIMAVANLAKRCLNVSRKHRPTMKEVSAELERIGLLHRKSIVQQNEEDTNEKSTMVERLCNWDA VPISATCDFDNARSVQSTVAEPLITYNTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16260			Wall-associated kinase family ...		Potri.003G186100 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	1.41	0.9753
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	2.44	0.9718
AT1G52190			Major facilitator superfamily ...		Potri.018G041700 [exp]	5.29	0.9621
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.006G062500 [exp]	5.47	0.9611
AT3G06240			F-box family protein (.1)		Potri.001G318400 [exp]	6.00	0.9508
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056400 [exp]	6.24	0.9489
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	6.63	0.9509
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.008G080000 [exp]	8.94	0.9513
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	9.00	0.9521
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.018G067000 [exp]	10.81	0.9361	Pt-ACS3.2

Compare expression of checked genes

Potri.003G186100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.