Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16170 92 / 5e-26 unknown protein AT1G79660 91 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G038750 [exp] 154 / 2e-50 AT1G16170 78 / 2e-20 unknown protein Potri.001G038200 [exp] 152 / 9e-50 AT1G16170 59 / 1e-12 unknown protein Potri.001G040300 [exp] 147 / 8e-48 AT1G16170 94 / 7e-27 unknown protein Potri.001G039700 [exp] 113 / 2e-34 AT1G16170 76 / 9e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024088 [exp] 100 / 4e-29 AT1G79660 119 / 6e-37 unknown protein Lus10041631 [exp] 100 / 4e-29 AT1G79660 119 / 9e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G186400.1 pacid=42787513 polypeptide=Potri.003G186400.1.p locus=Potri.003G186400 ID=Potri.003G186400.1.v4.1 annot-version=v4.1 ATGGTTCTTGATAGCATGATAACTTCTCCTCACCTGAGATCACCATCCTTCCGGAAACAATTCCCACGGGATGATTTGGGTAGCTGGTCAACTCTCCTTC AGAGACACCGTTTCCTCTTAACAGCCTTGGTTCTCTTGGGTTTCTTATGCACAATCTATCTCTACTTCGCTGTTACTCTAGGGGCCACTGAATCATGTTC TGGATTTACCGGAACCAAAAAGGCATTATGTCATGTGGAGCTGGCAAAGGATTCTGTAGGCCACGGAAAACTCAAGTTTTTCTAG
AA sequence Show only first row Show all	>Potri.003G186400.1 pacid=42787513 polypeptide=Potri.003G186400.1.p locus=Potri.003G186400 ID=Potri.003G186400.1.v4.1 annot-version=v4.1 MVLDSMITSPHLRSPSFRKQFPRDDLGSWSTLLQRHRFLLTALVLLGFLCTIYLYFAVTLGATESCSGFTGTKKALCHVELAKDSVGHGKLKFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16170			unknown protein		Potri.003G186400 [exp]	0	1
AT4G27660			unknown protein		Potri.012G006501 [exp]	3.16	0.8591
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	3.74	0.8651
AT1G48160			signal recognition particle 19...		Potri.015G036700 [exp]	5.74	0.8390	Pt-SRP19.2
AT1G18740			Protein of unknown function (D...		Potri.002G067800 [exp]	7.34	0.7789
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.004G013400 [exp]	10.39	0.8113	PDT1
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.003G122900 [exp]	13.22	0.8258
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	15.09	0.8043
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	15.87	0.8050
AT1G36980			unknown protein		Potri.005G171901 [exp]	16.73	0.7699
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	18.02	0.7438	LJLCB2.2

Compare expression of checked genes

Potri.003G186400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.