Plant FIBer expression Database

Potri.003G186900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05920 651 / 0 DHS, EDA22 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029688
[exp]
670 / 0 AT5G05920 657 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10042728
[exp]
647 / 0 AT5G05920 629 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10028867
[exp]
273 / 1e-87 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2)
Lus10020239
[exp]
171 / 2e-34 AT5G05920 181 / 2e-55 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
Lus10032793
[exp]
99 / 1e-25 AT5G05920 99 / 3e-26 embryo sac development arrest 22, deoxyhypusine synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF01916 DS Deoxyhypusine synthase
Representative CDS sequence
>Potri.003G186900.1 pacid=42786157 polypeptide=Potri.003G186900.1.p locus=Potri.003G186900 ID=Potri.003G186900.1.v4.1 annot-version=v4.1
ATGGAGGAGAATTTGCTATCATCAGTACGTACCACAGTGTTTAAAGAATCAGAAGCTCTTGATGGGAAATGCATTAAAATTGAAGGTTATGATTTTAATC
AAGGAGTGAACTACTCTAAGCTTCTCAAATCCATGGTCTCTACCGGGTTTCAAGCTTCCAACCTTGGAGATGCCATTCAAGTTGTTAATAACATGCTAGA
CTGGAGGCTTGCTGATGAAGAGATAACAGAAGATTGTAGTGATGAGGAGAGGGAGTTGGCCTATAGAGAGTCTGTGAGATGCAAACTGTTCTTGGGTTTT
ACATCAAATCTTGTTTCTTCAGGTGTCAGAGATACAATTCGATATCTTGTTCAGCATCATATGGTTGATGTAGTGGTTACAACGGCAGGTGGCATAGAAG
AAGATCTTATAAAATGCCTGGCACCAACATACAAAGGTGACTTTTCTCTACCCGGGGCTCAATTACGATCAAAAGGGTTGAATCGAATTGGTAACTTGTT
GGTACCTAATGACAACTACTGCAAATTTGAGGATTGGATCATTCCAATCTTTGACCAAATGTTGAAGGAACAAATTGAAGAGAATTTCACCTGGACACCT
TCTAAATTAATAGCTCGCATGGGGAAAGAAATAAATAATGAGAGTTCATACCTTTATTGGGCATATAAGAACGACATTCCAGTATTCTGTCCAGGCTTAA
CAGATGGTTCTCTAGGGGACATGCTATACTTTCATTCCTTCCACAACCCTGGTCTAATTGTTGACATAGTTCAAGATATTAGAGCCATGAATGGTGAAGC
TGTCCACGCAAGTCCTAGAAAAACTGGTATCATCATTCTTGGAGGTGGGCTTCCTAAGCATCATATATGCAATGCCAATATGATGCGTAACGGTGCAGAT
TATGCTGTATTCATCAATACAGCACAAGAATTTGATGGGAGTGATTCTGGTGCTCATCCTGATGAGGCTGTATCTTGGGGGAAAATACGAGGTTCTGCTA
AAACTGTTAAGGTCCACTGTGATGCAACTATTGCTTTTCCTCTCCTAGTTGCTGAAACATTTGCCCCTAGGAGGAACAGATTCTGCAGCAGTACTCAAAG
CTAG
AA sequence
>Potri.003G186900.1 pacid=42786157 polypeptide=Potri.003G186900.1.p locus=Potri.003G186900 ID=Potri.003G186900.1.v4.1 annot-version=v4.1
MEENLLSSVRTTVFKESEALDGKCIKIEGYDFNQGVNYSKLLKSMVSTGFQASNLGDAIQVVNNMLDWRLADEEITEDCSDEERELAYRESVRCKLFLGF
TSNLVSSGVRDTIRYLVQHHMVDVVVTTAGGIEEDLIKCLAPTYKGDFSLPGAQLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQIEENFTWTP
SKLIARMGKEINNESSYLYWAYKNDIPVFCPGLTDGSLGDMLYFHSFHNPGLIVDIVQDIRAMNGEAVHASPRKTGIIILGGGLPKHHICNANMMRNGAD
YAVFINTAQEFDGSDSGAHPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFAPRRNRFCSSTQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05920 DHS, EDA22 embryo sac development arrest ... Potri.003G186900
[exp]
0 1
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
1.73 0.8551
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Potri.006G153900
[exp]
2.44 0.8480 Pt-SYNC3.1
AT2G37560 ATORC2 origin recognition complex sec... Potri.003G094800
[exp]
2.44 0.7841 Pt-ORC2.1
AT1G19980 cytomatrix protein-related (.1... Potri.005G239500
[exp]
2.82 0.7832
AT3G18580 Nucleic acid-binding, OB-fold-... Potri.012G058800
[exp]
3.00 0.8217
AT4G26300 EMB1027 embryo defective 1027, Arginyl... Potri.002G198500
[exp]
5.47 0.7913
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065600
[exp]
5.65 0.7922 Pt-LOS1.2
AT3G05740 RECQI1 RECQ helicase l1 (.1) Potri.005G019800
[exp]
6.16 0.7501
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.008G042400
[exp]
6.70 0.7598 ATS9.3
AT5G56130 THO3, AtTEX1 Transducin/WD40 repeat-like su... Potri.001G470900
[exp]
6.92 0.7588

Potri.003G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.