Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 288 / 1e-96 ATMGL methionine gamma-lyase (.1) AT3G01120 99 / 6e-24 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 77 / 2e-16 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 62 / 3e-11 CBL cystathionine beta-lyase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 306 / 2e-103 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.017G086500 [exp] 96 / 9e-23 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G146600 [exp] 57 / 7e-10 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1) Potri.016G038200 [exp] 57 / 2e-09 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000880 [exp] 306 / 6e-104 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 296 / 2e-100 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 297 / 5e-100 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 278 / 4e-93 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10000074 [exp] 213 / 1e-70 AT1G64660 244 / 2e-80 methionine gamma-lyase (.1) Lus10033233 [exp] 195 / 1e-61 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10030694 [exp] 92 / 3e-21 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 90 / 1e-20 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 59 / 6e-10 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10039016 [exp] 56 / 6e-09 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01053 [poplar] [flax] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.003G187032.2 pacid=42786039 polypeptide=Potri.003G187032.2.p locus=Potri.003G187032 ID=Potri.003G187032.2.v4.1 annot-version=v4.1 ATGATTCTCTCCCCGGCAAAGCTTGGGGCAGATGTGGTTGTGCATAGCATCTCCAAGTATATTAGTGGTGAAGCGGATATTATCGCAGGTGCGGTTTGTG GGCCTGCTGATATAGTGGACGAAATGAGAGACCTTCACGGAGGGCCTTTGATGTTTCTTGGCCCAACAATGAATCCCAAGCTAGCCTTCGAGATATCAGG GAGAATCCCTCACCTGAGCATGAGGATGAAGAAACATTGCAAACGAGCAATGAAATATGTCACCAAGATGAAGGAACTGGACCCTAACCTAGATGTCTTA TACCCCGGGCTTAAAGAGCATCCACAGCACAGTCTCTTGAAGTCCATGTCTAATAAGGATTATGGGTTCGGTGGGGTTTTCTGCATTGACATGAAAACTG AAGGAAGGGCCTATCGCTTGATGGACAAATTGCAAAACAGCACCAAATTTGGGTTCATGGGCGTTAGCTTGGGCTATTATGAGACCCTCATGACTTGCTC TTCCAGGAGCACTAATAGTATGATGGACAGCAAGGAAAAGGAAAGTGCCGGCATTTCACCAGGGCTGGTAAGATTTTCGGTGGGATACGTGGGGACTTTT GAGCAGAAATGGAGCCAATTCACCAAGGCATATTCAGAAATGTAA
AA sequence Show only first row Show all	>Potri.003G187032.2 pacid=42786039 polypeptide=Potri.003G187032.2.p locus=Potri.003G187032 ID=Potri.003G187032.2.v4.1 annot-version=v4.1 MILSPAKLGADVVVHSISKYISGEADIIAGAVCGPADIVDEMRDLHGGPLMFLGPTMNPKLAFEISGRIPHLSMRMKKHCKRAMKYVTKMKELDPNLDVL YPGLKEHPQHSLLKSMSNKDYGFGGVFCIDMKTEGRAYRLMDKLQNSTKFGFMGVSLGYYETLMTCSSRSTNSMMDSKEKESAGISPGLVRFSVGYVGTF EQKWSQFTKAYSEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G187032 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003400 [exp]	4.58	0.9703
AT3G06270			Protein phosphatase 2C family ...		Potri.008G198700 [exp]	15.62	0.9132
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	17.54	0.9298	BFRUCT1.1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	19.28	0.9050
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	20.83	0.9249
AT5G63380			AMP-dependent synthetase and l...		Potri.010G057000 [exp]	21.49	0.9379	Ptr4CL12
					Potri.019G017304 [exp]	21.79	0.9324
AT1G18390			Protein kinase superfamily pro...		Potri.012G054725 [exp]	21.81	0.9517
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	27.96	0.9327
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	28.77	0.9054

Compare expression of checked genes

Potri.003G187032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.