Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 475 / 2e-170 Galactose mutarotase-like superfamily protein (.1) AT5G14500 384 / 1e-134 aldose 1-epimerase family protein (.1) AT3G61610 383 / 5e-134 Galactose mutarotase-like superfamily protein (.1) AT3G01590 382 / 6e-134 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 357 / 6e-124 Galactose mutarotase-like superfamily protein (.1) AT4G25900 331 / 2e-113 Galactose mutarotase-like superfamily protein (.1) AT5G66530 132 / 6e-36 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037700 [exp] 598 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 504 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 504 / 0 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 394 / 3e-138 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 382 / 6e-134 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 377 / 5e-132 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 134 / 7e-37 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 46 / 2e-05 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 43 / 0.0002 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020015 [exp] 511 / 0 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 499 / 8e-180 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 489 / 1e-175 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 488 / 2e-175 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 484 / 2e-173 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 391 / 5e-137 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 388 / 5e-136 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 384 / 9e-135 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 383 / 4e-134 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10032084 [exp] 382 / 5e-132 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.003G187300.1 pacid=42786305 polypeptide=Potri.003G187300.1.p locus=Potri.003G187300 ID=Potri.003G187300.1.v4.1 annot-version=v4.1 ATGTCTGAAGAGACCAAGTACGTGGAGCTTTGTAAGGGTATAAATGGCCTTGACAAGATCATCTTGCGTGAGGTTCGAGGCTGCTCTGCGGAGGTATACT TGTTTGGAGGTCATGTCACATCCTGGAAGAATGAACATGGGGAAGAATTGCTTTTTGTTAGTAGCAAGGCTATATTTAAGCCTCCAAAGGCTATCCGTGG AGGTATTCCAATCTGCTTTCCTCAATTCAGCAATCTTGGTTCTCTTGAACCACATGGATTTGCAAGGACCAGGTTTTGGTCTATTGATAATGACCCCCCA CCTTTCCCAACAAATAGCTCCAACAAGGCCTTCATTGACTTAATACTCAAACACTCTGAAGAAGATGTGAAGATCTGGCCTCACAGATACGAATTTCGCC TACGGATAACTCTGGGTCCTGGAGGAGATTTGATGATGACCTCTCGCATTCGAAATACAAATACTGATGGGAAATCTTTCACGTTTACATTTGCGTACCA CACATATTTTCATGTTACGGATATCAGTGAAGTGAGGGTAGAAGGACTTGAAACACTAGATTATTTGGATAATCTGAAGAACAGAGAACGATTCACTGAA CAAGGAGATGCAATAGTCTTTGAATCAGAAGTGGACAAAGTATATCTCAGAACACCTACCAAAATTGCTGTTCTGGACCATGAAAGGAAGAGAACATTTG AATTGCGGAAAGATGGACTTCCTGATGCTGTGGTTTGGAATCCCTGGGATAAGAAAGCAAAGACCATACCTGATCTTGGTGATGACGAGTACAAGCATAT GCTGTGTGTAGAGGCTGCTTGTGTGGAAAAGCCCATTACTTTGAAACCTGGTGAAGAGTGGAGAGGAAGGCAGGAGCTCTCTGCTGTTCCTTCTAGTTAC TGCAGCGGACAGCTTAATCCAGAAAGTGCGATCTTAAGTGAGGATATAGGGCCTGCATGA
AA sequence Show only first row Show all	>Potri.003G187300.1 pacid=42786305 polypeptide=Potri.003G187300.1.p locus=Potri.003G187300 ID=Potri.003G187300.1.v4.1 annot-version=v4.1 MSEETKYVELCKGINGLDKIILREVRGCSAEVYLFGGHVTSWKNEHGEELLFVSSKAIFKPPKAIRGGIPICFPQFSNLGSLEPHGFARTRFWSIDNDPP PFPTNSSNKAFIDLILKHSEEDVKIWPHRYEFRLRITLGPGGDLMMTSRIRNTNTDGKSFTFTFAYHTYFHVTDISEVRVEGLETLDYLDNLKNRERFTE QGDAIVFESEVDKVYLRTPTKIAVLDHERKRTFELRKDGLPDAVVWNPWDKKAKTIPDLGDDEYKHMLCVEAACVEKPITLKPGEEWRGRQELSAVPSSY CSGQLNPESAILSEDIGPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	0	1
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	2.44	0.8586
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	2.82	0.8911	Pt-GF14.4
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	4.58	0.8571
AT1G20540			Transducin/WD40 repeat-like su...		Potri.005G249800 [exp]	4.89	0.8819
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	8.00	0.8208
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	9.38	0.8769
AT5G42330			unknown protein		Potri.005G250800 [exp]	11.66	0.8364
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Potri.008G139900 [exp]	13.74	0.8237
AT1G10030		ERG28	homolog of yeast ergosterol28 ...		Potri.002G112700 [exp]	14.83	0.8412
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	15.39	0.8782

Compare expression of checked genes

Potri.003G187300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.