Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-4CL.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 741 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 715 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G21230 650 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G65060 636 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT4G05160 366 / 8e-121 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 327 / 8e-106 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 317 / 1e-101 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 312 / 1e-99 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 310 / 8e-99 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 307 / 1e-97 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 919 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 795 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 782 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 664 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.001G055700 [exp] 365 / 1e-119 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G112800 [exp] 360 / 2e-118 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 353 / 8e-116 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 336 / 7e-109 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 329 / 4e-106 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 822 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 802 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 793 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 790 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10021431 [exp] 356 / 7e-117 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 354 / 5e-116 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 327 / 5e-105 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10013831 [exp] 326 / 5e-105 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 317 / 3e-101 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10038259 [exp] 315 / 1e-100 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G188500.1 pacid=42784676 polypeptide=Potri.003G188500.1.p locus=Potri.003G188500 ID=Potri.003G188500.1.v4.1 annot-version=v4.1 ATGGATACAATAACAAAGCAAAAAGAAGAATTCATCTTTCGCTCAAAATTGCCAGATATTGACATCCCGAAAGGCCTTCCTCTGCATTCATACGTTTTTG AAAACTTCTCTAAATATCCATCGAAACCTTGTCTGATAAATGGCGCAAATGGGGATGTCTACACCTATGCCGATGTTGAGCTCACGGCAAGAAGAGCTGC TTCTGGTCTTAACAAGCTTGGAATTCAACAAGGTGATGTGATCATGCTCATCCTGCCAAGTTCACCTGAATTCGTGCTTGCTTTCTTAGGTGCTTCACAC AGAGGTGCCATTACTACTGCTGCCAATCCTTTCTCCACTCCTGCAGAGCTAGCAAAACAAGCCAAAGCCTCAAAAGCAAAGCTTTTGATAACACAGGCTT GTTACTATGACAAGGTCAAAGATTATGCACAACAAAACGATGTCAAGGTCATGTGTGTAGACTCTGCCCCAGATGTGTGCTTGCACTTTTCAGAGCTAAC ACAGGCTGATGATAATGATATGCCCCAAGTTGACATCAGGCCTGACGATGTTGTGGCATTGCCTTATTCTTCAGGGACTACAGGATTACCAAAAGGAGTC ATGTTAACACACAAAGGGCTAATAACCAGTGTGGCTCAACAAGTAGATGGCGACAATCCTAACCTATATTTTCACAGTGAAGATGTGATTCTGTGCGTGC TGCCTATGTTCCATATTTATGCTCTGAATTCAATAATGCTTTGTGGGTTGAGAGTTGGTGCTGCAATTTTGATAATGCCAAAGTTTGAGATCGGTTCTTT GCTGGGATTGATTGAGAAGTATAAGGTATCTATAGCACCAGTTGTACCACCAGTGATGGTGGCAATTGCCAAGTCACCTGATCTTGATAAACATGACTTG TCTTCGTTGAGGATGTTGAAGTCTGGAGGGTCGCCATTGGGAAAGGAGCTTGAAGATACCGTCAGAGCCAGGTTTCCTCAGGCTAGACTTGGTCAGGGAT ATGGAATGACCGAGGCAGGACCTGTTCTAGCAATGTGTTTGGCATTTGCCAAGGAACCTTTTGACATAAAACCAGGTGCATGCGGGACTGTGGTTAGGAA TGCAGAGATGAAGATTGTTGATCCTGAAACAGGTTCCTCTCTACCAAGGAACCTGCCTGGTGAGATTTGCATCCGAGGTGATCAGATCATGAAAGGATAT CTTAATGACCCTGAGGCAACCTCAAGAACGATAGACAACGATGGATGGTTACACACAGGCGATATCGGCTTTATTGACGATGATGATGAGCTTTTCATTG TTGATAGATTGAAGGAATTGATCAAATATAAAGGGTTTCAGGTTGCTCCTGCTGAACTCGAAGCTTTGTTGCAAGCTCATACAGGGATATCTGATGCTGC TGTGGTAGGGATGAAAGACGAGAATTCAGGAGAAATTCCGGTTGCATTTGTAATAAAATCAGAAAACTCTCAAGTCACCGGAGAAGAAATTATGCAGTAT ATTTCAAAACAGGTGATATATTACAAGAAAATAAAACGAGTGTTCTTCGTAGAAGCCATTCCCAAGGCACCATCAGGCAAAATCTTGAGGAAAAATTTGA GAGAGAGGTTGGCAGGTGGTTTGCAAAAGTAA
AA sequence Show only first row Show all	>Potri.003G188500.1 pacid=42784676 polypeptide=Potri.003G188500.1.p locus=Potri.003G188500 ID=Potri.003G188500.1.v4.1 annot-version=v4.1 MDTITKQKEEFIFRSKLPDIDIPKGLPLHSYVFENFSKYPSKPCLINGANGDVYTYADVELTARRAASGLNKLGIQQGDVIMLILPSSPEFVLAFLGASH RGAITTAANPFSTPAELAKQAKASKAKLLITQACYYDKVKDYAQQNDVKVMCVDSAPDVCLHFSELTQADDNDMPQVDIRPDDVVALPYSSGTTGLPKGV MLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMVAIAKSPDLDKHDL SSLRMLKSGGSPLGKELEDTVRARFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGSSLPRNLPGEICIRGDQIMKGY LNDPEATSRTIDNDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLQAHTGISDAAVVGMKDENSGEIPVAFVIKSENSQVTGEEIMQY ISKQVIYYKKIKRVFFVEAIPKAPSGKILRKNLRERLAGGLQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.003G188500 [exp]	0	1	Pt-4CL.4
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.004G049300 [exp]	2.00	0.8958
AT4G32330			TPX2 (targeting protein for Xk...		Potri.006G254400 [exp]	2.44	0.9094
AT2G46550			unknown protein		Potri.005G071400 [exp]	2.44	0.9094
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	3.00	0.8987
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	5.47	0.8781
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	7.34	0.8816	HB1.3
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105500 [exp]	8.54	0.7967
					Potri.019G009900 [exp]	10.58	0.8661
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	12.96	0.8732
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	14.49	0.8400

Compare expression of checked genes

Potri.003G188500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.