Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48560 71 / 4e-12 unknown protein AT5G27650 57 / 9e-08 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 44 / 0.0005 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026800 [exp] 59 / 1e-08 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 55 / 3e-07 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 47 / 0.0001 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031498 [exp] 60 / 8e-09 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 60 / 8e-09 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G188600.1 pacid=42785192 polypeptide=Potri.003G188600.1.p locus=Potri.003G188600 ID=Potri.003G188600.1.v4.1 annot-version=v4.1 ATGCAAAATCATGCTTCACAGGAAAAAGAAACCAAAAATCAAAGAAACCCAGAAACAATGAGGTTTCGAAGAGGAGATGTAGTGTGGGCAAGAGTGATAT ACCCGCAAACATGGTACCCAGGTCTGGTTTCAACAACCGACACTCTTGGCATCTCCGTTTCTTTCTTTAACATCATCAAACCTCGTTACGTTGTGGAATC CGAGGTACGTTCTTTCAAAGAAAACTTTGGGTCATTAGTTAAGACAATAAAATGTAGTATTGGTCAGGTACTTCTTGATCATGTGTTGAAATTGATTGCG CGACGTGCCGTTTCAAGCTTGAAATGCCCCTGTCAGTACCCATTACTCGAATCTGAGAATGAAAGAAGAAAGATCAGAAGTGAAGATGTGGGTTTCTTGT TTTGCGCGAATTCGGTGGTGGGTTTGGTTCGCGGACTGGGGGTTTGTCCATTCGTGGAAGATTCAGATTTTGTGTGTGCAGTCAGTTTGGTTTCTCAGGT TCAAATGTTTCGTCGATTTATGGTGACCCGTCAGAAGTTGTTATTGAATGAAGAGGCAATTAAGAAAAAGCGTAATGAGGATGATTGTGTTTGTTTATCA GCTTCAGGTAATGCAACGCAATCAGTGACACAAAAATCAGTCACTTCAGAACTTGAAGTTGAAAGCTTTTGTGAGGATCAACGTAGTGAAGTGTTGGCTC AAACTAAGCAAACCAAGCCACAACCACTCACTGAGATGCCAGTAAACTTGCATTGTCTTGCTTCAAATGCATTCTTCATGAGGAGAGAATGCTTGAATAC TGTGAAGCAGAGTTGCTCGAGATTTGGAAATTTGTCATACCAAAGCACTTCTAATCTTGAATTGAGAAAATTCTTTTGTAGAAGCATTGGCGTTAGATTT TCTTATCCAGACTGCATCAGGAGCCAGCCAAGTGTTGAGGTTGATGGAAAAGCTGGTAGGGGAAATTTTGGCCCCCCTGCACCTTACATTGCAAACCCTA TCAACTTCACTGGGGTAAAAAGACAGAATGATCAGTCTGCTGGTTCTGGTTTTTCTTTCAAGTTGCAGAAGCCTACACCTCGCTGCCCAATTTGTAAAGC TGATGCATATCATCAGAAAAGAAAATCAGAGCACAGAGTTCATATATCTGATACTTTAATCCCTGGCCCAGCTTTCTTGGATTCTATTTGCAACACTCAA CCACTTTTGTCTTCTACAGGAGGGGATGCTCATTTACAAAGTAGAACCAGATTTGAGACAGGAGCAGAGATCCAAGACCGCCATTCCATGCACTTGGTCC AGAACATGCCTCACGTTTACCTTGCAAAAGATGCATCTTACCGTAGCAATATTCTGGAGCTCAGCATGTTTCAGGAGAGCAAAGATAATGTTGATGCCCT TAATGATAATGGGACTTGCTTGCCTGATGCTGAAATGCAGGAACCAGGAGGAATCACCAGTATCCTGAAAGATTGTGAGGCCTTAAAACCTGTTGAGTAT GATGCTGTTGAGAAGATAGCTGAAGGAATTCTGAGTGAGGATAAGATGGATGATTGTAAACTAGTTCTGAAACTTTCTACCACCGAGCCAGTGATTAATT GTCTTGTGGAAACTTCTGATCTATCATTCAAGCCTCAGGTGGCTCAACAATCAGTGCTCGATGCCTTTGCCAATTCCAAAACTTATTCAGACAATGACAA GTATATGAATGCAAATGCAGCAACCAGCAATTGCTTGCCATATGAATCGAATACTGATCAAATCCAGATGAAGCCTACCAACAGTGATGATGCCATATCT TTTGGAACCAGCAGAAGAATGAGCATTATTCAATCTTTTGGAGATAGTTTAATGAATAACAAGGAGTGCTATCTACCATGTACTTTTGATCCATTAGTCA AGCCGCAATTGACCGAACGATTGGCCATTGGCACCTTTTCCAGTTCCATAATTTATTCTGAAAATGACAAGATTGGCAATGCAAGAGCAGCAACCAGCAA TTGCTTTCCATGCAAACTGAATATTGATCAATCCCAGTTAGAGCATGGCGACAATGATGATGCAACATCTGTCGAAACCAGCTTAGGAGCGAGCATGATT TCACCTTTTGAAGGCAGTTCTATGGATGATAAGGGCCACTGTCGACCTGGCACTTCTGACCTGTCATTCAAACCTCAAATGGCTCAACAATCAGCGGTTG GTGCCTTCGACAATATTAAAACTCGATCTGGAAATGAAAAGATTGGAAATTGTTTGTCATCTGAACTGAACACTCACAAAGTCTTGATTCAGCCTTGCAA CAGTGATAATGCCACATCTGTTGAGACCAGCAGAAGAGTGAGAATGATTTCATCTTCTGAAGGCAGTTCTATGAATAATGAGCGCAATATACCAGGTACA TCTGATCAACCATTCAAGTCAAAAGTATCTCAACAACCAGCTGAGAGCACATTCACCTATTCTAATTCTCTGCACATGAAGTTTCCCAAAGATTTTAATC TTCCTTCTAAAATGGATTTGATAAGAAAATTTAGTAGATTTGGTAGAGTGGATCCTTTGAAAACCAAAGTCTTTCAAGTTATGGGCTCTGCCCAGGTGGT GTTCTTTGAGGAGCTTGATGCGGTCGCTGCGTATCAGTATGCAAAGAGGAAGAACAATTTATATGGAGTAGCAACGGTTCTGTATTGGCTTGACCGATCA GGGCAAAAGAGAAGAGGACCAAACTTTCTTTCTCCATCGTCATCCTCAAATCTAAAATCATCTCTTAAAAAATCCGGTCGGCGTGGAAAAGAGGATAATA AACGCACCCGGAAGGTGAGATTTACAATAGAAACTTAG
AA sequence Show only first row Show all	>Potri.003G188600.1 pacid=42785192 polypeptide=Potri.003G188600.1.p locus=Potri.003G188600 ID=Potri.003G188600.1.v4.1 annot-version=v4.1 MQNHASQEKETKNQRNPETMRFRRGDVVWARVIYPQTWYPGLVSTTDTLGISVSFFNIIKPRYVVESEVRSFKENFGSLVKTIKCSIGQVLLDHVLKLIA RRAVSSLKCPCQYPLLESENERRKIRSEDVGFLFCANSVVGLVRGLGVCPFVEDSDFVCAVSLVSQVQMFRRFMVTRQKLLLNEEAIKKKRNEDDCVCLS ASGNATQSVTQKSVTSELEVESFCEDQRSEVLAQTKQTKPQPLTEMPVNLHCLASNAFFMRRECLNTVKQSCSRFGNLSYQSTSNLELRKFFCRSIGVRF SYPDCIRSQPSVEVDGKAGRGNFGPPAPYIANPINFTGVKRQNDQSAGSGFSFKLQKPTPRCPICKADAYHQKRKSEHRVHISDTLIPGPAFLDSICNTQ PLLSSTGGDAHLQSRTRFETGAEIQDRHSMHLVQNMPHVYLAKDASYRSNILELSMFQESKDNVDALNDNGTCLPDAEMQEPGGITSILKDCEALKPVEY DAVEKIAEGILSEDKMDDCKLVLKLSTTEPVINCLVETSDLSFKPQVAQQSVLDAFANSKTYSDNDKYMNANAATSNCLPYESNTDQIQMKPTNSDDAIS FGTSRRMSIIQSFGDSLMNNKECYLPCTFDPLVKPQLTERLAIGTFSSSIIYSENDKIGNARAATSNCFPCKLNIDQSQLEHGDNDDATSVETSLGASMI SPFEGSSMDDKGHCRPGTSDLSFKPQMAQQSAVGAFDNIKTRSGNEKIGNCLSSELNTHKVLIQPCNSDNATSVETSRRVRMISSSEGSSMNNERNIPGT SDQPFKSKVSQQPAESTFTYSNSLHMKFPKDFNLPSKMDLIRKFSRFGRVDPLKTKVFQVMGSAQVVFFEELDAVAAYQYAKRKNNLYGVATVLYWLDRS GQKRRGPNFLSPSSSSNLKSSLKKSGRRGKEDNKRTRKVRFTIET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48560			unknown protein		Potri.003G188600 [exp]	0	1
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	3.74	0.7699
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.014G174700 [exp]	10.67	0.7130
AT5G41685			Mitochondrial outer membrane t...		Potri.018G146602 [exp]	12.84	0.7394
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.004G104800 [exp]	14.45	0.7806
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	15.49	0.7648
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	15.65	0.7566
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	18.16	0.7627
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	21.49	0.7601	Pt-CYCB2.2
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	27.92	0.7414
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Potri.005G224500 [exp]	29.24	0.6684	ATTIM44.2

Compare expression of checked genes

Potri.003G188600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.