Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03760 87 / 4e-21 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT2G03750 86 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 84 / 7e-20 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT3G45080 80 / 9e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 79 / 2e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 77 / 2e-17 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT3G45070 76 / 3e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 76 / 5e-17 SOT7 sulphotransferase 7 (.1) AT2G27570 75 / 6e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 72 / 1e-15 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189100 [exp] 200 / 8e-65 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G188800 [exp] 193 / 4e-62 AT5G07010 325 / 2e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036600 [exp] 125 / 1e-35 AT5G07010 292 / 2e-97 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036500 [exp] 115 / 9e-33 AT5G07010 227 / 2e-73 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G188750 [exp] 108 / 8e-32 AT5G07010 89 / 3e-22 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036700 [exp] 114 / 1e-31 AT5G07010 270 / 1e-88 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189066 [exp] 114 / 1e-31 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G005200 [exp] 102 / 5e-27 AT5G07010 290 / 8e-97 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 99 / 1e-25 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 80 / 1e-18 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 80 / 2e-18 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10041611 [exp] 67 / 9e-14 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034656 [exp] 57 / 8e-11 AT1G74090 77 / 4e-17 ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) Lus10031624 [exp] 57 / 2e-10 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017878 [exp] 54 / 2e-09 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033718 [exp] 52 / 2e-08 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003068 [exp] 47 / 6e-07 AT3G45070 63 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 46 / 2e-06 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 45 / 5e-06 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.003G188933.1 pacid=42787184 polypeptide=Potri.003G188933.1.p locus=Potri.003G188933 ID=Potri.003G188933.1.v4.1 annot-version=v4.1 ATGGATCTCCCCTTTAAAGGCACTGGGCTCTTTTGCACCATCCATTGCTCACCACACCATTTCTCCTTCGTTATCTTCATGGAGACGACCGCAATCTCTT CAAACGGAGAAAGGGAGCTAAAAGATGAGATCCAAGGCTTGGTTGCAAGCTTTCCTAGTGAGAAAAACTGGGATGGATCTCCCCTTTATTTCTGTAAAGG GGTCTGGCATCCAGTTTTCGCCATTAGAGGGGCTCTTTCCTTTCAACAACATTTCATTGCACACGACACAGATATAATACTAGCGAGCATGCCAAAATCA GGCACCACCTGGTTAAAAGCTCTCACGTTCTCTGTTGTAAACCGCAACATTTACAGTCCCAAAGAGAGTCCCTTACTCCCTACGTACCCCACCTCATGA
AA sequence Show only first row Show all	>Potri.003G188933.1 pacid=42787184 polypeptide=Potri.003G188933.1.p locus=Potri.003G188933 ID=Potri.003G188933.1.v4.1 annot-version=v4.1 MDLPFKGTGLFCTIHCSPHHFSFVIFMETTAISSNGERELKDEIQGLVASFPSEKNWDGSPLYFCKGVWHPVFAIRGALSFQQHFIAHDTDIILASMPKS GTTWLKALTFSVVNRNIYSPKESPLLPTYPTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188933 [exp]	0	1
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	3.16	0.9457
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	6.24	0.9358
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	7.74	0.9419
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133900 [exp]	15.62	0.8699	Pt-CIPK14.1
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	18.00	0.9318
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	18.46	0.8905
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	18.97	0.9154
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	20.17	0.9191
					Potri.010G144600 [exp]	20.19	0.8759
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Potri.013G160600 [exp]	21.90	0.9316

Compare expression of checked genes

Potri.003G188933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.