Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20160 584 / 0 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G20150 554 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 482 / 2e-159 Subtilisin-like serine endopeptidase family protein (.1) AT4G34980 481 / 3e-159 SLP2 subtilisin-like serine protease 2 (.1) AT5G59100 480 / 4e-159 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 479 / 8e-159 ATSBT4.12 subtilase 4.12 (.1.2.3) AT2G04160 478 / 8e-158 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 464 / 3e-153 ATSBT4.13 subtilase 4.13 (.1) AT5G59810 464 / 2e-152 ATSBT5.4 Subtilase family protein (.1) AT1G32960 461 / 2e-151 ATSBT3.3 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243000 [exp] 590 / 0 AT1G20160 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.002G018600 [exp] 580 / 0 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.004G161400 [exp] 526 / 1e-176 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 526 / 2e-176 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.011G150900 [exp] 518 / 3e-173 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 497 / 2e-165 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 498 / 6e-165 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.001G455800 [exp] 494 / 4e-164 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.009G144500 [exp] 490 / 1e-162 AT5G59810 508 / 9e-170 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034544 [exp] 558 / 0 AT1G20160 846 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10035478 [exp] 501 / 6e-167 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10016064 [exp] 500 / 5e-166 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 491 / 8e-163 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10009868 [exp] 467 / 8e-155 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10007083 [exp] 471 / 1e-154 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 469 / 2e-154 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 466 / 4e-154 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10038772 [exp] 468 / 7e-154 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10020458 [exp] 462 / 2e-151 AT5G45650 940 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain
Representative CDS sequence Show only first row Show all	>Potri.003G189200.3 pacid=42785052 polypeptide=Potri.003G189200.3.p locus=Potri.003G189200 ID=Potri.003G189200.3.v4.1 annot-version=v4.1 ATGCCACTCTTTTCATTCTCCTCCATTTTTCTTGCCATCCCATCTTCCATGGCTTCTCTTCTGCATCATCTCTTTTTTCTCTCTGTACTCTGCCTTCTCA TCATCAGCTCCACTGCATCAAATCAACTTCCTCAGCATTATGTGGTTTATATGGGGAGTTCATCAAGTGGAAATGGAGGAGAAGCTCCTGAGATTGCAGA GGCAGGTCATTTGCAGCTGTTGTCCTCCATTATACCAAGTCATGAGAGTGAAAGAATATCGCTAATCCATCATTATAGCCATGCTTTCAAGGGCTTCTCT GCCATGCTTACAGAGAATGAAGCCTCTGTATTAGCTGGCCATGATGGTATAGTATCCATCTTCCGGGATCCAATTCTTCAACTTCATACTACACGTTCAT GGGATTTCCTGGAGGCATCATCAGGCATGCAAAACAAGCACAAGCATCCTCCTTTGTCAAGTGATGTCATAATTGGGATGATAGACACAGGGATATGGCC TGAGTCGCCAAGTTTCAATGATGATGGAATTGGGGAAATCCCTTCAAGATGGAAAGGAGTTTGCATGGAAGGATATGACTTCAAGAAATCCAATTGCAAT AGGAAGTTGATAGGAGCAAGATACTATGACTCCATCCAAAGGACATACAGTAATAACAAGACCCACATGGCTAAACCAGATGACTCACCAAGGGACTTTG ATGGCCATGGTACTCACACCACATCCATTGCAGCTGGTGCTAAAGTTGCTAATGTTAGTTACCATGACTTAGCTGGAGGCACAGCTAGGGGTGGCTCACC TTCATCTAGAATAGCAATATACAAAGCATGCACATTAGATGGTTGTTCTGGTTCCACCATATTGAAGGCAATTGATGATGCAATTAAGGATGGAGTTGAT ATAATCTCCATTTCTATTGGGATGAGCTCGCTCTTTCAATCTGATTACCTAAATGACCCCATAGCAATTGGTTCATTTCATGCACAACAAATGAATATCA TGGTAGTGTGCTCTGGAGGAAATGATGGGCCTGATCTTTACACTATTGTTAATTCAGCTCCTTGGATCTTTACAGTTGCAGCTTCTAATATTGATAGAGA TTTCCAATCTACTGTGCTGCTTGGAAATGGGAAGACTTTCCAAGGGTCTGCCATCAGTTTCTCAAACTTCAATCGCTCAAGAAATTATCCTCTCGCATTT GGAGAGGATGTTGCTGCTAAGTTTACCCCAATATCAGAAGCTAGGAATTGCTACCCAGGATCATTAGATACACAGAAAGTTGCGGGCAAGATTGTTGTAT GCACAGATGATGATTTAAATATTCCACGGCAAATCAAGAAATTAGTCGTGGAAGATGCTAGAGCCAAAGGGTTGATTTTAGTCAGTGAGGATGAGACAGT TGTTCCTTTTGATTCAGGCACGTTTCCATTTGCTGAAGTTGGAAATCTTTCAGGGTTGCAGATTATTAAATACATCAATGGTACCAAAAAGCCTACTGCA ACCATCCTTCCTACCCGTGATGTTCCTCGATATAGACCAGCTCCAACCGTTGCATATTTCTCTTCCAGAGGGCCTGGGCAATATACAGAAAACATTCTCA AGCCCGATATAATGGCTCCAGGAGTTGCCATTTTGGCAGCCGTGATACCTGAAAAAGAAGCAGGGAGTGTTCCTGTTGGAAATAAGCCGTCTGGATATGC CATAAAGTCTGGTACATCAATGGCTTGCCCTCATGTGACAGGGGCTGCAGCATTCATTAAGTCTTTTCATCATGGGTGGAGTACTTCTATGATCAAATCT GCACTTATGACAACAGCAACCATTTATGATAATACGGGGAAACCCTTACAAAACAGCTCACATCACTTTGCGAATCCCCATGAAGTAGGGGTTGGAGAAA TAAACCCACTCAAAGCTCTTAATCCAGGATTAGTTTTTGAAACAACCACGGAAGATTTTTTGCAATTCCTTTGTTATTATGGATATTCAGAGAAAAACAT AAGATCTATGTCCAAGACAAACTTCAACTGCCCCAGAATCAGTATTGACAGACTCATCTCCAATATCAACTATCCATCGATATCCATCAGTAACCTTGAT CGACATAAGCCTGCTCAGACTATCAAAAGAACTGTGACTAATGTGGGATGTCCAAATGCCACATACATTTCCAGAGTGCATGCTCCTGTGGGATTAGAGG TGAAGGTTTTCCCAAAGAAGATTGTTTTTATCGAAGGGTTAACAAGGGTTTCCTTCAAAGTCTTATTCTATGGCAAGGAGGCTTCCAGTGGCTACAATTT TGGGTCCGTAACATGGTTTGATGGTCGACATTCTGTCCTTCTATCATTTGCAGTGAACGTAGAATAA
AA sequence Show only first row Show all	>Potri.003G189200.3 pacid=42785052 polypeptide=Potri.003G189200.3.p locus=Potri.003G189200 ID=Potri.003G189200.3.v4.1 annot-version=v4.1 MPLFSFSSIFLAIPSSMASLLHHLFFLSVLCLLIISSTASNQLPQHYVVYMGSSSSGNGGEAPEIAEAGHLQLLSSIIPSHESERISLIHHYSHAFKGFS AMLTENEASVLAGHDGIVSIFRDPILQLHTTRSWDFLEASSGMQNKHKHPPLSSDVIIGMIDTGIWPESPSFNDDGIGEIPSRWKGVCMEGYDFKKSNCN RKLIGARYYDSIQRTYSNNKTHMAKPDDSPRDFDGHGTHTTSIAAGAKVANVSYHDLAGGTARGGSPSSRIAIYKACTLDGCSGSTILKAIDDAIKDGVD IISISIGMSSLFQSDYLNDPIAIGSFHAQQMNIMVVCSGGNDGPDLYTIVNSAPWIFTVAASNIDRDFQSTVLLGNGKTFQGSAISFSNFNRSRNYPLAF GEDVAAKFTPISEARNCYPGSLDTQKVAGKIVVCTDDDLNIPRQIKKLVVEDARAKGLILVSEDETVVPFDSGTFPFAEVGNLSGLQIIKYINGTKKPTA TILPTRDVPRYRPAPTVAYFSSRGPGQYTENILKPDIMAPGVAILAAVIPEKEAGSVPVGNKPSGYAIKSGTSMACPHVTGAAAFIKSFHHGWSTSMIKS ALMTTATIYDNTGKPLQNSSHHFANPHEVGVGEINPLKALNPGLVFETTTEDFLQFLCYYGYSEKNIRSMSKTNFNCPRISIDRLISNINYPSISISNLD RHKPAQTIKRTVTNVGCPNATYISRVHAPVGLEVKVFPKKIVFIEGLTRVSFKVLFYGKEASSGYNFGSVTWFDGRHSVLLSFAVNVE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.003G189200 [exp]	0	1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G019600 [exp]	5.83	0.6940
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	7.07	0.7062	Pt-HPT2.3
					Potri.001G132232 [exp]	9.38	0.6609
AT1G54200			unknown protein		Potri.018G049900 [exp]	14.69	0.6806
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	21.56	0.6914
					Potri.016G013000 [exp]	24.49	0.6720
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	25.78	0.6610
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	29.46	0.6326
AT1G11440			unknown protein		Potri.004G029500 [exp]	29.66	0.6594
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.009G093100 [exp]	30.33	0.6176

Compare expression of checked genes

Potri.003G189200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.