Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54360 481 / 1e-170 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036400 [exp] 640 / 0 AT3G54360 498 / 4e-177 zinc ion binding (.1) Potri.002G044100 [exp] 42 / 0.0005 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024116 [exp] 571 / 0 AT3G54360 491 / 8e-175 zinc ion binding (.1) Lus10041603 [exp] 559 / 0 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10014749 [exp] 45 / 7e-05 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 44 / 0.0001 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G189400.2 pacid=42786533 polypeptide=Potri.003G189400.2.p locus=Potri.003G189400 ID=Potri.003G189400.2.v4.1 annot-version=v4.1 ATGACCCCAGTTTGCCCATTTGTGAAAGCTTCAAGACCTGATGATGGGTCACCAAGAAAACCAGGGGAATGTCCGATTAAACACGGGGCCGAGCATGAAG GAGGAGGAAAGGCTAAGAAAGAGTCTGGTGGTGAATCTGCTACCGTTTCGCCGAAATGCCCTTTTGGATATGATTCTCAGACATTTAAATTGGGACCTCT TAGTTGTATGATATGCCAAGCTCTTCTCTTTGATTGTAGCAAATGCGTGCCGTGCTCTCATGTGTATTGCAAAGTGTGTATTTCGCGATTTAAGGACTGT CCGCTGTGTGGAGCTGATGTTGAGAAGATTGAAGCTGATACGGATCTGCAGAGTGTAGTTGATCGGTTCATTGATGGTCATGCTAGAATCAAGAGATCTC ATGTTGACATGGATAAAGAGGGGGAAGCAGGTGAGAATAAAAAAGTGATATACGAGGATGTTTCTTTGGAGAGGGGTGCTTTCTTGGTGCAACAAGCCAT GAGGGCATTTCGAGCCCAGAATGTGGAAAGTGCAAAATCAAGACTTAGTCTTTGTGCAGAAGACATCCGAGGTCGGATAGAAACAGTGGGCAACACATCG GAATTGTGTTCGCAGCTTGGAGCAGTGCTGGGAATGCTTGGGGACTGCTGTCGAGCAGTGGGGGATGCTGGCTCCGCGGTTACATACTTCGAAGAGAGTG TAGAATTCCTATCAAAATTGGCTGCAGCTGATCTGGAGATAACGCATACGCATTCTGTTTCACTTAATAAAATTGGAGATCTCAAATATTATGATGGAGA TCTGGAGGCTGCAAGATCTTACTATATGCGTTCTCTCAATGTGCGACGTGATGCCATCAAACATCATCCTAGTGTTTCATCCCAGACCCTAGATGTGGCT GTTTCCCTTGCAAAAGTTGCCGATGCGGACAGGAGTATTGGTAACGAGGACGCCGCACTTGATAGATTTCATGAGGCCATAAAATTATTGGAATCCTTGA CATTAAAACCAGAAGAAGCTGGTCTTGAGCAACGGCGCCTTTCTGTGCTGGAATTTCTTAATAATCAACTTGCGGAGAAACAGTCTGATTGCACTTCCTC GAGTCTGATATCCTGA
AA sequence Show only first row Show all	>Potri.003G189400.2 pacid=42786533 polypeptide=Potri.003G189400.2.p locus=Potri.003G189400 ID=Potri.003G189400.2.v4.1 annot-version=v4.1 MTPVCPFVKASRPDDGSPRKPGECPIKHGAEHEGGGKAKKESGGESATVSPKCPFGYDSQTFKLGPLSCMICQALLFDCSKCVPCSHVYCKVCISRFKDC PLCGADVEKIEADTDLQSVVDRFIDGHARIKRSHVDMDKEGEAGENKKVIYEDVSLERGAFLVQQAMRAFRAQNVESAKSRLSLCAEDIRGRIETVGNTS ELCSQLGAVLGMLGDCCRAVGDAGSAVTYFEESVEFLSKLAAADLEITHTHSVSLNKIGDLKYYDGDLEAARSYYMRSLNVRRDAIKHHPSVSSQTLDVA VSLAKVADADRSIGNEDAALDRFHEAIKLLESLTLKPEEAGLEQRRLSVLEFLNNQLAEKQSDCTSSSLIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.003G052700 [exp]	2.00	0.9615
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	2.23	0.9709
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.014G118500 [exp]	4.47	0.9596
AT4G18740			Rho termination factor (.1.2.3...		Potri.011G069300 [exp]	4.89	0.9547
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	5.74	0.9549
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	6.78	0.9619	NAP7.2
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Potri.013G078600 [exp]	7.14	0.9617
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	12.00	0.9560
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	13.67	0.9525
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	16.12	0.9485

Compare expression of checked genes

Potri.003G189400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.