Plant FIBer expression Database

Potri.003G189500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06120 1792 / 0 ARM repeat superfamily protein (.1.2.3.4)
AT3G04490 56 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G036100
[exp]
2017 / 0 AT5G06120 1817 / 0.0 ARM repeat superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041603
[exp]
1696 / 0 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4)
Lus10024115
[exp]
1673 / 0 AT5G06120 1616 / 0.0 ARM repeat superfamily protein (.1.2.3.4)
Lus10022024
[exp]
61 / 1e-08 AT3G04490 1370 / 0.0 unknown protein
Lus10042566
[exp]
56 / 2e-07 AT3G04490 1382 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF03810 IBN_N Importin-beta N-terminal domain
Representative CDS sequence
>Potri.003G189500.3 pacid=42784834 polypeptide=Potri.003G189500.3.p locus=Potri.003G189500 ID=Potri.003G189500.3.v4.1 annot-version=v4.1
ATGGAGAGTTTAGCGCAGCTAGAAGCATTGTGCGAGAGGTTATATAACTCACAAGATTCTGCAGAGAGAGCACACGCTGAGAATACGTTGAAATGCTTTT
CAGTGAATACAGACTACATTTCGCAATGCCAGTACATTCTTGACAATGCGTCTACGCCTTACTCGTTGATGCTCGCCAGTTCTAGTTTGTTGAAGCAAGT
CACTGATCACAGCCTCTCATTGCAGCTCCGTCTTGATATCAGGAATTACTTGATCAACTATTTGGCTACGAGAGGACCGTTGCCGCATTTTGTTAACGCG
TCTTTGATCCTACTTCTCTGTCGTGTTACGAAGTTTGGATGGTTTGATGATGATAAGTTTAGAGAAGTAGTTAAGGAGGCTACTGATTTCTTGAGTCAGG
CATCATCAAATCACTATGAAATTGGTTTGAAGATATTGAATCAACTTGTGTCTGAAATGAATCAGCCAAATACAGGGTTGTCGTCAACACATCATCGAAG
GGTAGCCTGCTCCTTCAGGGATCAGTCACTTTTTCAAATATTCCAAATTTCTTTAACATCATTGGGTCAACTGAAAAATGATGTTACAGGTCGATTGCAA
GAGTTGGCACTTTCTCTTTCGCTAAAATGTTTATCTTTTGATTTTGTTGGGACATCAATTGATGAAAGTTCAGAGGAGTTTGGTACTATTCAGGTTTTGA
TTACTTATTCTAGTAATATTCCGACATCCTGGAGGTCTGTTTTAGAGGACCCTTCTACATTGCAGATCTTTTTTGATTATTATGCTATTACAACATCTCC
TTGTTCAAAAGAGGCACTGGAATGCTTGGTCCGATTAGCATCAGTACGGCGATCTTTGTTCACAAATGATGCTGCTCGTTCCAAGTTTTTGGCCCATTTG
ATGACAGGAACCAAGGAAATTCTTCAAACAGGACAAGGTCTTGCTGATCATGACAATTACCATGAGTATTGTCGCCTTCTTGGACGCTTCAGAGTGAATT
ATCAGTTGTCAGAGCTTGTGAATGTGGAAGGCTACAGTGATTGGATACAGTTGGTGGCAGAGTTCACTTTAAAGTCTTTGCAGTCCTGGCAGTGGGCCAG
CAGCAGTGTATACTATCTTCTAGGGTTGTGGTCCAGATTGGTGACATCTGTACCATATTTGAAGGGAGAGGCACCAAGTTTGCTTGATGAATTTGTGCCT
AAAATTACTGAAGGCTTTATAACATCAAGATTTAATTCTGTGCAGGCTGGATTTGCTGACGACGACGATCCATTGGATAATGTTGAGCTTCTTCAAGATC
AGCTAGATTGCTTTCCTTATCTTTGCAGATTCCAGTACCAAACAAGTAGTTTATATATAATAACCACAATGGAGCCTATTCTGCAAGCATACACGGAAAT
AGCACTACGACAGAGTGCTGATAACAGTGAGCTTGCTGTTATTGAGGCAAAACTTTCTTGGATTGTTCATATCATTGCTGCTATTCTTAAAATAAAACAA
TCCACTGGCTGTAGCGTGGAGTCTCAAGAAGTGCTTGATGCAGAACTTTCAGCTCGTGTTTTGCAATTAATAAATGTTACTGACAGTGGGATACATAGCC
AGAGGTATGGTGAATTAAGCAAGCAAAGACTTGATCGAGCAATTCTTACCTTCTTTCAGCATTTCCGTAAGTCTTATGTTGGTGATCAGGCTGTGCACTC
ATCGAAGCAGCTATATGCTCGTTTGTCTGAACTTCTTGGACTCGGTGATCATCTACTATTATTGAATGTGATTGTATCAAAAATCGCTACAAATTTAAAG
TGTTATACAGAGAGTGAGGAGGTCATTAATCATACATTAAGCTTGTTCTTGGAGCTGGCATCTGGATATATGACTGGAAAGCTGCTTTTGAAGCTGGATG
CTGTCAAATTTATAGTTGCCAACCATACTAGGGACCGCTTTCCTTTCTTAGAAGAATATAGAAGCTCTCGTAGCAGAACAACCTTCTATTATACTATTGG
CTGGTTAATATTCATGGAGGACAGTCCTGTGAGATTCAAGTCTTCGATGGAACCGCTTTTACAAGTGTTTATAAGGTTGGAATCAACTCCTGATTCGATG
TTTCGGACTGATGTGGTGAAGTATGCGCTAATTGGGTTAATGAGGGATCTTAGAGGAATTGCTATGGCCACAAACAGTCGAAGAACATATGGGCTTTTAT
TTGATTGGCTGTATCCTGCTCACATGCCGCTTCTCTTGAAAGGCATTTCACATTGGACAGACACACCAGAGGTCACCACCCCTCTATTAAAATTCACTGC
TGAATTTGTGTTGAACAAGGCCCAACGTTTAACTTTTGATTCGTCGTCTCCTAATGGCATTCTTCTTTTCCGGGAAGTCAGCAAATTAATTGTAGCCTAT
GGAACAAGGATATTATCTCTTCCAAATGTTGCTGACATATATGGCTACAAATACAAGGGAATATGGATTTGCCTAACTATTCTGTCAAGAGCTCTTGCGG
GAAACTATGTCAACTTTGGCGTGTTTGAACTGTATGGTGATAGAGCACTCTCTGATGTACTTGATATTGCTCTAAAGATGACACTGTCAATTCCTCTGGC
TGATATTTTGGCATTTCGAAAGCTTACAAGGGCTTACTTTGCATTCTTGGAGGTTCTATTCAGCAGCCACATTGTGTTCATATTCAATCTGGATACAAAC
ACCTTCATGCATATTGTTGGTTCCCTGGAATCAGGTCTTAAAGGTCTGGATACAAATATCTCATCACAGTGTGCATCTGCTGTCGACAATTTGGCTGCTT
TCTATTTCAACAACATTACAATGGGGGAGCCACCCACTTCACCTGCTGTAATTAATCTTGCTCGTCATATTGCAGATTGCCCCAATTTGTTTCCCGAGAT
ACTGAAGACTTTGTTTGAGATTCTTTTATTTGAGGACTGTGGCAACCAGTGGAGTCTTAGCAGACCCATGTTGAGCTTAGCTATTATCAGTGAGCAGATA
TTCTCTGATTTGAAAGCTCAAATTTTGGCTTCACAGCCAGTGGATCAACATCAGCGGCTTGCCCTTTGTTTTGACAAACTGATGGCAGATGTTACTCGAA
GCTTGGATTCGAAGAACAGGGATAAATTTACTCAGAATCTGACGGTTTTCAGGCATGAATTTCGTGTCAAATAG
AA sequence
>Potri.003G189500.3 pacid=42784834 polypeptide=Potri.003G189500.3.p locus=Potri.003G189500 ID=Potri.003G189500.3.v4.1 annot-version=v4.1
MESLAQLEALCERLYNSQDSAERAHAENTLKCFSVNTDYISQCQYILDNASTPYSLMLASSSLLKQVTDHSLSLQLRLDIRNYLINYLATRGPLPHFVNA
SLILLLCRVTKFGWFDDDKFREVVKEATDFLSQASSNHYEIGLKILNQLVSEMNQPNTGLSSTHHRRVACSFRDQSLFQIFQISLTSLGQLKNDVTGRLQ
ELALSLSLKCLSFDFVGTSIDESSEEFGTIQVLITYSSNIPTSWRSVLEDPSTLQIFFDYYAITTSPCSKEALECLVRLASVRRSLFTNDAARSKFLAHL
MTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGEAPSLLDEFVP
KITEGFITSRFNSVQAGFADDDDPLDNVELLQDQLDCFPYLCRFQYQTSSLYIITTMEPILQAYTEIALRQSADNSELAVIEAKLSWIVHIIAAILKIKQ
STGCSVESQEVLDAELSARVLQLINVTDSGIHSQRYGELSKQRLDRAILTFFQHFRKSYVGDQAVHSSKQLYARLSELLGLGDHLLLLNVIVSKIATNLK
CYTESEEVINHTLSLFLELASGYMTGKLLLKLDAVKFIVANHTRDRFPFLEEYRSSRSRTTFYYTIGWLIFMEDSPVRFKSSMEPLLQVFIRLESTPDSM
FRTDVVKYALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFTAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAY
GTRILSLPNVADIYGYKYKGIWICLTILSRALAGNYVNFGVFELYGDRALSDVLDIALKMTLSIPLADILAFRKLTRAYFAFLEVLFSSHIVFIFNLDTN
TFMHIVGSLESGLKGLDTNISSQCASAVDNLAAFYFNNITMGEPPTSPAVINLARHIADCPNLFPEILKTLFEILLFEDCGNQWSLSRPMLSLAIISEQI
FSDLKAQILASQPVDQHQRLALCFDKLMADVTRSLDSKNRDKFTQNLTVFRHEFRVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06120 ARM repeat superfamily protein... Potri.003G189500
[exp]
0 1
AT1G50730 unknown protein Potri.001G356700
[exp]
1.00 0.8576
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Potri.018G072600
[exp]
4.00 0.8232
AT1G49040 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE... Potri.012G060800
[exp]
5.47 0.8394 SCD1.2
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.018G065900
[exp]
7.93 0.8393
AT5G19660 ATSBT6.1 ,ATS1P SITE-1 protease (.1) Potri.018G081400
[exp]
11.22 0.7906
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
11.53 0.7997 Pt-ECA3.3
AT3G23980 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1) Potri.008G174800
[exp]
12.72 0.7635
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.008G035300
[exp]
19.74 0.7647
AT5G15070 Phosphoglycerate mutase-like f... Potri.004G129900
[exp]
21.79 0.7733
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.010G227100
[exp]
23.23 0.7879

Potri.003G189500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.