Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) AT1G55200 316 / 8e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 313 / 7e-96 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G38560 264 / 2e-78 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 262 / 2e-77 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G07870 253 / 6e-77 Protein kinase superfamily protein (.1.2) AT3G24540 253 / 4e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 257 / 2e-75 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G52290 251 / 5e-75 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24550 250 / 3e-73 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035900 [exp] 974 / 0 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.001G224800 [exp] 355 / 1e-113 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 329 / 2e-102 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 327 / 2e-101 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 296 / 2e-90 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 276 / 1e-83 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G183000 [exp] 254 / 1e-75 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G153600 [exp] 255 / 2e-75 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 249 / 2e-75 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041608 [exp] 752 / 0 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024111 [exp] 722 / 0 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10006148 [exp] 328 / 6e-102 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 327 / 2e-100 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 311 / 5e-96 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10036100 [exp] 303 / 2e-93 AT1G55200 201 / 1e-55 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 268 / 6e-81 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 268 / 1e-78 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 260 / 7e-76 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 255 / 4e-75 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G189850.1 pacid=42785493 polypeptide=Potri.003G189850.1.p locus=Potri.003G189850 ID=Potri.003G189850.1.v4.1 annot-version=v4.1 ATGTCTGAAGGTGTTCAGAGAGTAGTGGTGATCCAAGATGCATCGCGGGATATGAGTCCGATAGCAATCAGATTGGTCCTTAATGGATTTTCCCTTAAGC CTGGAGATGCAATCATACTCTTTGGAGTTCTTCACCAGGTTAATAATCCTATGGGATACAGGTTCAAGGTGGACTCAAAATCAATGTTTGGGGCTAACCC AAAATTCATTGAAGAAGAAGTTTCCAGGAAGACAGAAGAGTATGTTAACAATGTGGAAATACTGGAAATAGCTAAGCAGTGTGAAATGGAACAGATTGAG TTCCGTGTAGAAGTTCGTGCTGGATCTACGCCAAAGGAGCTTGCTCTAAAAGCTGCTAAAATTTTCAGGGCCACATGGGTGATACTTGACAGGCAAATGA AGAAAGACAAGAGATACTTTATGGACAAGCTTCCATGTGGGATATCAAGGATGAAGCGTAACAACACCATCGAACAACTCAGAGGTTCGAAAACAAGAGA GAACATAAAAGTTAATGAAAAAGAGGAAGAAAGGGTACCGTATGATGAAATGATACCAGGGAGCCCAAAGCGCAGAAGGTCTGCCCGCAAGCCCCCAGCT CCTCCCAGCACTGGTGCAGTCAGAGAACAACAATTCAATCACGGTGAAGAAATAACTCCTGAAAATCACGGGAGATCAGATTCATTCTCTAAATCCGCAT CAACTAGTCAGTTCATGATGACTACAGCTTCATCTTCAACTTCAACTACAGGTTATCATGAACATGACACTTCAAGTTCTACTTCTAAAACCGCAAAGCA TGCCTACATGAATTTTCAAGGGAAAGAAAACACTGCCAACACACAACAAGCAACAGCAGGAAAACATTCCCTGGCTGAAAATACTAAGTTTGAGCAGAAG GAAAGGGAGGCAGAGAGCCTAAATGAACAACAAAGACGACAAAAGAACATTGATAATTGGATGGGAGAGAGTCCTACAGATGAGGTATTCAAAAATTCCA TTTGCTTAGTTTGCAAGAATAGACGGCCAAAGATAGGATGGAAGAGAGACTTCAGTTATAAAGAGATCCATTCTGCAACAGAAGGATTTTCCCAAACGAA ATTCCTATCAGAAGGTGGTTTTGGCTCTGTCTACAGAGGCGATCTGGATGGACTGGCTTTTGCTGTGAAGCAGCACAACAGTGCAAGTTTCCAAGGAGAA AAGGAATTCAAGTCTGAAGTTGAAGTGCTCAGCAAAGCCAGACATGAGAATTTGGTCATGCTGTTGGGATCTTGTTCTGAAGGAAACGACAGGCTGCTTG TTTATGAATACGTGTGCAATGGTTCACTGGACCAACATTTATCAAAACATGCGCGCAAGCCCCTCACCTGGGAAAAGAGGATGAAGATAGCTTTGGGAGC TGCCAGAGGGCTAAAATATCTGCATGAAAACAATATTATCCACAGAGATATGAGGCCAAACAACATTCTCATAACCCATGATCATGAAGCACTGCTTGGA GATTTCGGTCTTGCAAGAACTCAACACGAAGATTCAGAGCCGTCCTTGGAGACAAGAGTTGTTGGAACTCTCGGATACTTGGCACCAGAATATGCAGAAT GTGGGAAGGTGTCAACCAAGACAGATGTTTATGCTTTTGGTGTGGTGCTATTGCAGCTGATCACAGGACTAAAGACCACAGACAAAATACTAGGAGGGAA AAGTCTTGTAGGATGGGCAAGGCCGCTGCTGAAAGAAAGAAACTACCCAGATTTAATTGATCAGAGGATCTTAGAGTCCCACGATGTCCATCAACTCTTT TGGATGGTTCGAGTGGCAGAAAAATGTCTCAGCAAGGATCCTCAGAAGCGATTAACTATGGATAAGGTGGTTTATGCCCTGAACTACATAATAGAAAGCA ACTCAACGTGCAGTCTTGGAGAACTAACCCCAGCAAAATCAGATTCACCAAGCAGTGTACAGGACTCCTATGAATCTTATGATGATACTACTAGCTTTAC CATAGAAACCTTCTCTCCAGGCTTTCCTACAGATACTACGTCCACCAGTAGCACGAGTCCAAGACTTCCACCATCACCCCCAATAAACTTTCGCCACCAC CTTCATTATTAG
AA sequence Show only first row Show all	>Potri.003G189850.1 pacid=42785493 polypeptide=Potri.003G189850.1.p locus=Potri.003G189850 ID=Potri.003G189850.1.v4.1 annot-version=v4.1 MSEGVQRVVVIQDASRDMSPIAIRLVLNGFSLKPGDAIILFGVLHQVNNPMGYRFKVDSKSMFGANPKFIEEEVSRKTEEYVNNVEILEIAKQCEMEQIE FRVEVRAGSTPKELALKAAKIFRATWVILDRQMKKDKRYFMDKLPCGISRMKRNNTIEQLRGSKTRENIKVNEKEEERVPYDEMIPGSPKRRRSARKPPA PPSTGAVREQQFNHGEEITPENHGRSDSFSKSASTSQFMMTTASSSTSTTGYHEHDTSSSTSKTAKHAYMNFQGKENTANTQQATAGKHSLAENTKFEQK EREAESLNEQQRRQKNIDNWMGESPTDEVFKNSICLVCKNRRPKIGWKRDFSYKEIHSATEGFSQTKFLSEGGFGSVYRGDLDGLAFAVKQHNSASFQGE KEFKSEVEVLSKARHENLVMLLGSCSEGNDRLLVYEYVCNGSLDQHLSKHARKPLTWEKRMKIALGAARGLKYLHENNIIHRDMRPNNILITHDHEALLG DFGLARTQHEDSEPSLETRVVGTLGYLAPEYAECGKVSTKTDVYAFGVVLLQLITGLKTTDKILGGKSLVGWARPLLKERNYPDLIDQRILESHDVHQLF WMVRVAEKCLSKDPQKRLTMDKVVYALNYIIESNSTCSLGELTPAKSDSPSSVQDSYESYDDTTSFTIETFSPGFPTDTTSTSSTSPRLPPSPPINFRHH LHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56790			Protein kinase superfamily pro...		Potri.003G189850 [exp]	0	1
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	6.40	0.9792
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	10.67	0.9736
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	11.40	0.9749
					Potri.001G133700 [exp]	11.70	0.9171
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	16.12	0.9730
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	20.37	0.9724
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	21.90	0.9719
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	22.75	0.9706
AT1G79620			Leucine-rich repeat protein ki...		Potri.008G125600 [exp]	24.37	0.9686
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	25.45	0.9653

Compare expression of checked genes

Potri.003G189850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.