Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) AT1G21150 180 / 9e-53 Mitochondrial transcription termination factor family protein (.1) AT5G64950 151 / 7e-42 Mitochondrial transcription termination factor family protein (.1) AT1G61980 128 / 3e-33 Mitochondrial transcription termination factor family protein (.1) AT1G61970 126 / 2e-32 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 117 / 2e-29 Mitochondrial transcription termination factor family protein (.1) AT1G56380 116 / 5e-29 Mitochondrial transcription termination factor family protein (.1.2) AT1G62085 111 / 6e-27 Mitochondrial transcription termination factor family protein (.1) AT5G23930 108 / 9e-26 Mitochondrial transcription termination factor family protein (.1) AT1G62120 104 / 1e-24 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190300 [exp] 707 / 0 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.004G222000 [exp] 442 / 8e-156 AT5G07900 200 / 1e-60 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 441 / 5e-155 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 420 / 7e-147 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 393 / 5e-136 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G035200 [exp] 390 / 2e-135 AT5G07900 168 / 3e-48 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 377 / 7e-130 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 375 / 3e-129 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.001G034966 [exp] 375 / 5e-129 AT5G07900 201 / 1e-60 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008688 [exp] 301 / 9e-100 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 184 / 3e-54 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 177 / 1e-51 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 174 / 2e-50 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 172 / 6e-50 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 169 / 2e-48 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 162 / 4e-46 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 160 / 1e-45 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10036450 [exp] 152 / 1e-42 AT5G07900 176 / 3e-51 Mitochondrial transcription termination factor family protein (.1) Lus10041122 [exp] 143 / 7e-39 AT5G07900 166 / 2e-47 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.003G190400.1 pacid=42784797 polypeptide=Potri.003G190400.1.p locus=Potri.003G190400 ID=Potri.003G190400.1.v4.1 annot-version=v4.1 ATGAGCACCAATATTAATAGCAATATACCATTGAGAAATCTGCTTTCTCTGATTCAAAGACGTTTCCTGAAAACATCATCTACTACACGACCTCCCAATG CCTCATCTTCTTTTACTGTTCAATACCTCGTCAACTCATGCGGGCTTCCTCTACAATCTGCTCTTTCCGTCTCCAAAAAGTTCCAAATCGATGAGAATAA CCTTCAGAAGCCTCAATCCGTCATCCAGTTCTTGAAATCTTACGATTTTCAGGATGCCCACGTTGCCAAATTGATCGAAAAGTGGCCTGCTGTCCTCCGT TCCAGAACAGAAGGTAATCTCAAGCCTAAGTTTGACTTCTTCATAAAAAATGGCTTTGTGGGTCAGCTTCTGCCTCAGCTCGCCGTATTGGATCCGAGAA TTTTTAGAGCCTCCTTACATGCTCATATCAAGCCATGTTTTGAGCTTTTGAAACGATTTCTTGAAAGTAATGAGAATATTTTAGCTGCTCTTAGTCGTGC TCCTTTTTTAATGTCCTTTAGTTTCAATGCTACCGTGCGACCAAACCTTGACTTGTTGAAAAAGGAGGGAGTGACCGCTGATAGGGTTGCAAAACTGCTG TTGTCGCAGCCAAGATCTTTACAACATAGTAATAATAGGATGGTTTATGCTGTCACTTATCTTAAGCAACTGGGCATCGAACCAGGCAAGACAATGTATA TACATGCTCTTACGGTGATTGCACGAATGAATGAATCTGCCTGGAGGAAGAAAATTGATATGTTTAAGAGTGTTGGGTGGACCGAAGAGGAGGTTTTATG GGCTTTTAAGCGATTCCCTTGTCTATTATTAAGTTCAGAGGAGAAAATCCGGAGCATGATGGATTTCTTTCTGAATAAGATGAAGTTGGAACGGAAAATT ATAGTTGCCAATCCTGCGCTTCTTAAATACTCTTTTGGCAATAGGATTCTTCCGAGGTGCAATGTTTTGGAGGTTTTGAAGTCAAGGAAGCTGATTAAAG GAGACACAAACATTGCTACTTTTCTAAAATTAAGCGAGAAGGATTTCATGGAGAGATGTGTTGCCAAGTATGAGGATAAAGTTCCTGGTTTACTGGAGAT GTATGGAGGAATTGACAAAGGAAAAGGATGA
AA sequence Show only first row Show all	>Potri.003G190400.1 pacid=42784797 polypeptide=Potri.003G190400.1.p locus=Potri.003G190400 ID=Potri.003G190400.1.v4.1 annot-version=v4.1 MSTNINSNIPLRNLLSLIQRRFLKTSSTTRPPNASSSFTVQYLVNSCGLPLQSALSVSKKFQIDENNLQKPQSVIQFLKSYDFQDAHVAKLIEKWPAVLR SRTEGNLKPKFDFFIKNGFVGQLLPQLAVLDPRIFRASLHAHIKPCFELLKRFLESNENILAALSRAPFLMSFSFNATVRPNLDLLKKEGVTADRVAKLL LSQPRSLQHSNNRMVYAVTYLKQLGIEPGKTMYIHALTVIARMNESAWRKKIDMFKSVGWTEEEVLWAFKRFPCLLLSSEEKIRSMMDFFLNKMKLERKI IVANPALLKYSFGNRILPRCNVLEVLKSRKLIKGDTNIATFLKLSEKDFMERCVAKYEDKVPGLLEMYGGIDKGKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07900			Mitochondrial transcription te...		Potri.003G190400 [exp]	0	1
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	2.82	0.8628
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	3.46	0.8640
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.003G220100 [exp]	5.29	0.8203
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	6.24	0.8418
AT1G06720			P-loop containing nucleoside t...		Potri.017G017700 [exp]	9.38	0.8187
AT5G41190			unknown protein		Potri.003G124700 [exp]	11.74	0.8289
AT4G31520			SDA1 family protein (.1)		Potri.008G182900 [exp]	12.00	0.8330
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	12.44	0.7499
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	13.78	0.8325
AT2G19540			Transducin family protein / WD...		Potri.007G094000 [exp]	14.49	0.7826

Compare expression of checked genes

Potri.003G190400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.