Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 1178 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 588 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 581 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 578 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 573 / 0 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 554 / 0 MEF22 mitochondrial editing factor 22 (.1) AT5G16860 553 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 537 / 3e-179 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 534 / 2e-178 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 533 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 610 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G181800 [exp] 599 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 596 / 0 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 593 / 0 AT3G22690 582 / 0.0 unknown protein Potri.001G075800 [exp] 587 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 584 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 577 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 574 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 572 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 1295 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028837 [exp] 743 / 0 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 595 / 0 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 590 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 584 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 577 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 571 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 566 / 0 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 563 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 555 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G191000.1 pacid=42784958 polypeptide=Potri.003G191000.1.p locus=Potri.003G191000 ID=Potri.003G191000.1.v4.1 annot-version=v4.1 ATGAGCTCGCACCTATTGCCCTTCACTGCAACCCCGCCGCCGCAAATTCCCTCCAAAGCAAGCCCACTTGCTCAACACACTCTCTCTCAACGAACCCATA TCCCATCTCACATATACAAGCACCCGGCCGCTATCCTCTTAGAACTCTGCACTTCCTCTAAAGAAGTTCACCAAATCCTCCCTCAAATCATTAAAAACGG GCTCTACAATGAAACCCTTTTTCAGACCAAGCTCATTAGTCTTTTTTGTAAGTATGGTAATTTAACTGAAGCTTCGCGTGTTTTTGAACCTATTGAGGAT AAGTTTGATGCTCTTTATCATACTATGCTTAAAGGGTATGCAAAGAGTTCTTCTTTAGATAGTGCTTTGTCGTTTTTTTCTCGAATGAAGCATGATAGTG TTAGGCCTGTTGTGTATAATTTTACTTATTTGTTGAAACTTTGTGGAGATAATTCTGATCTTAAGAGGGGTAAGGAGATTCATGGGAGTGTAATAACAAG TGGGTTTTCGTGGAATTTGTTTGCTATGACTGGGGTGGTGAACATGTATGCGAAATGTAGACAAATTAATGACGCGTATAACATGTTCGATAGAATGCCT GAGAGGGATTTGGTTTGTTGGAATACGATGATTTCTGGGTATGCGCAAAATGGGTTTGCTAAGGTTGCTTTGATGTTGGTTTTGAGGATGTCTGAAGAAG GGCATAGGCCGGATTCGATTACCATTGTTTCTATTTTGCCTGCAGTTGCGGATACAAGGTTGTTGAGAATTGGCATGGCAGTTCATGGATATGTTTTGAG AGCTGGGTTTGAGTCACTTGTGAATGTTTCAACTGCTCTTGTGGATATGTATTCAAAATGTGGGTCAGTGAGTATTGCCAGAGTAATCTTTGATGGGATG GATCATAGAACTGTTGTTTCGTGGAATTCCATGATTGATGGGTATGTGCAAAGTGGAGATGCTGAGGGAGCAATGTTGATATTTCAGAAGATGTTGGATG AAGGGGTTCAACCAACTAATGTTACTGTTATGGGAGCTTTGCATGCTTGTGCTGATCTAGGTGATCTCGAGAGAGGAAAGTTTGTTCATAAATTAGTGGA CCAATTGAAACTTGATTCTGATGTTTCAGTGATGAATTCTTTGATTTCCATGTATTCCAAGTGCAAGAGGGTTGATATTGCTGCTGATATATTTAAAAAT TTGCGAAATAAAACACTTGTATCCTGGAATGCCATGATATTAGGCTATGCCCAGAATGGGTGTGTGAATGAGGCTTTAAATGCGTTCTGTGAGATGCAAT CTCGAAACATAAAGCCAGACTCTTTCACAATGGTGAGTGTGATTCCTGCTCTTGCAGAGTTATCGATTCCACGTCAGGCAAAGTGGATCCATGGACTTGT TATTCGAAGGTTTTTAGACAAGAATGTTTTTGTGATGACTGCTCTTGTCGACATGTATGCAAAGTGTGGAGCCATTCACACAGCAAGAAAGCTCTTTGAC ATGATGAATGCAAGGCATGTGATTACATGGAATGCTATGATAGATGGATATGGAACTCATGGACTTGGAAAAACTTCTGTAGAACTGTTCAAGGAAATGA AGAAGGGGACCATCAAGCCAAATGATATTACATTCCTCTGTGCCCTTTCTGCTTGTAGTCACTCAGGTTTGGTAGAAGAGGGGCTCTGTTTCTTTGAAAG CATGAAGAAAGATTATGGCATAGAGCCTACAATGGATCACTATGGAGCGATGGTTGACCTTCTTGGTCGAGCTGGTCGACTCAACCAGGCTTGGGATTTC ATTCAAAAGATGCCTATTAAACCCGGAATAACTGTTTATGGCGCAATGCTTGGTGCTTGCAAAATTCATAAGAATGTTGACTTAGGGGAGAAGGCAGCAT TTGAAATCTTCAAGTTAAACCCAGACGATGGCGGATACCACGTGTTGCTTGCCAACATATATGCCACAGCTTCAATGTGGGGCAAAGTGGCTAAAGTGAG AACTATAATGGAGAAGTCAGGGCTTCAAAAAACTCCAGGCTGCAGTTTAGTGGAAATAGGGAATGAGGTTCACAGTTTCTATTCTGGAACTACAAGCCAT CCCCAATCCAAAAAGATCTATTCTTATCTCGAGACACTTGTAGATGAGATCAGAGCTGCTGGTTATGTTCCCGACACCAATTCAATCCATGACGTGGAAG ATGATGTTAAGGTGCAGTTGCTGAATACTCATAGTGAGAAGTTGGCAATTGCCTTTGGGCTGCTAAATACGAGCACAGGCACTCCCATACACATCAGGAA AAATCTACGAGTCTGCGGCGATTGTCATAATGCAACAAAATATATTTCACTTGTCACCGGGAGGGAAATTATAGTTCGTGATATGCATAGATTTCACCTT TTCAAGGATGGAGTCTGTTCTTGTGGAGATTATTGGTAA
AA sequence Show only first row Show all	>Potri.003G191000.1 pacid=42784958 polypeptide=Potri.003G191000.1.p locus=Potri.003G191000 ID=Potri.003G191000.1.v4.1 annot-version=v4.1 MSSHLLPFTATPPPQIPSKASPLAQHTLSQRTHIPSHIYKHPAAILLELCTSSKEVHQILPQIIKNGLYNETLFQTKLISLFCKYGNLTEASRVFEPIED KFDALYHTMLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMP ERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGM DHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKN LRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD MMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDF IQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSH PQSKKIYSYLETLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHL FKDGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	0	1
AT3G26630			Tetratricopeptide repeat (TPR)...		Potri.002G220600 [exp]	2.82	0.9697
AT2G35490			Plastid-lipid associated prote...		Potri.003G095900 [exp]	4.24	0.9671
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Potri.001G358400 [exp]	4.47	0.9671
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	5.65	0.9573
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	8.36	0.9562
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Potri.008G146700 [exp]	8.48	0.9655
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	8.48	0.9488
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	8.48	0.9682
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	8.83	0.9592
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	9.48	0.9691

Compare expression of checked genes

Potri.003G191000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.