Plant FIBer expression Database

Potri.003G191100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12400 418 / 3e-145 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1)
AT5G13860 409 / 3e-142 ELC-LIKE, ATELC-LIKE ELCH-like (.1)
AT2G38830 146 / 2e-40 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G034200
[exp]
553 / 0 AT5G13860 457 / 4e-161 ELCH-like (.1)
Potri.002G046200
[exp]
172 / 2e-50 AT2G38830 280 / 9e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024108
[exp]
474 / 7e-166 AT5G13860 502 / 6e-177 ELCH-like (.1)
Lus10008690
[exp]
452 / 2e-158 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Lus10026129
[exp]
449 / 3e-157 AT5G13860 485 / 2e-171 ELCH-like (.1)
Lus10041612
[exp]
258 / 6e-82 AT5G13860 499 / 1e-176 ELCH-like (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0208 UBC PF05743 UEV UEV domain
CL0596 VPS23_C PF09454 Vps23_core Vps23 core domain
Representative CDS sequence
>Potri.003G191100.1 pacid=42785836 polypeptide=Potri.003G191100.1.p locus=Potri.003G191100 ID=Potri.003G191100.1.v4.1 annot-version=v4.1
ATGGTTCCTCCACCGTCGTCAAACCACCAAGCAATCCAACAATTCCTCTCCTCCGTCCTCTCTCAAAGCGGCACTTCCGCCCTTCCTTACTCCGAAGACA
CCAAATGGCTCATCCGCCAACACCTCCTTTCACTCACCACTACTTCCCCCTCTCTCGAACCCAAAACCGCTACCTTCACTCACAACGATGGTCGCACCGT
CAATCTTCTCCAGGCTGACGGCACCGTTCCGATCACTTTCATATCTGTCACTTATAACATCCCGGTTATCATCTGGCTTTTCGAATCTTACCCTCGCCAC
CCTCCTTGTGTTTACGTGAACCCCACACGCGATATGATCATCAAAAGATCTCATCCTTTTGTCAATCCCTCGGGGCTCGTTTCGATCCCTTATTTGCAGA
ATTGGATCTACCCTAGTTCTAATTTGGTTGATTTGGCTCGCGAGCTGAGCTCGGTTTTTGGGAGGGATCCTCCTCTGTTTTCCCAACGCCCCAAACCTAA
CCCTAATCCCAATTATCATCCAAATCAATCGAGTCTTGGGTCAGTGGGTAACACGGGAGGTGGTGGTGGGTATCCGAGACCGATTGTCAGACCACCACAG
TATCCGCCGTATGGTAGTGGTGGTGCGGTGGGGAAGGTAGAGGCGGAGGATGCAGCGGAGGTTTATAAAAGAAATGTGATTGATAAGCTTGTGGAGAATG
TTCACGGGGATATGTTGCAGTTGAGTAAAACGAGGGAGGCGGAGATGGAAAGCTGGTTTAGCGCACAATCTGTGTTGAGGGGGAGAGAGGAGGAGTTTAA
TAAAGGGTTGAAAGAAATGAGAGATAAGATGGAAGGGTTGGAGTTGCATTTGCAAGTTGTTTTGATGAATACGGATGTTTTGGAAGCATGGGTTAGGGAA
AATAAGGGGAAGTTGAAAGGGGGCTCGGAGGATATTGACGTGGATAATGCTTTTGAGTGTGTGGATGTTTTGTCGAAGCAGATGTTGGAGTGCACAGCGG
TGGACATGGCAATTGAGGATGCGGTTTATTCTTTGGAGAAAGCAGTGCAAGAAGGGGCAATGCCATTTGATCAATATTTGAGGAATGTGAGGTTGTTGTC
TAGAGAGCAGTTTTTTAACAGGGCAACTGCAGCGAAAGTTAGGGCTGCACAAATGCAGGCTCAGGTTGCTGGTATGGCTGCCAGGGCACCACGTTATGCT
ACCTGA
AA sequence
>Potri.003G191100.1 pacid=42785836 polypeptide=Potri.003G191100.1.p locus=Potri.003G191100 ID=Potri.003G191100.1.v4.1 annot-version=v4.1
MVPPPSSNHQAIQQFLSSVLSQSGTSALPYSEDTKWLIRQHLLSLTTTSPSLEPKTATFTHNDGRTVNLLQADGTVPITFISVTYNIPVIIWLFESYPRH
PPCVYVNPTRDMIIKRSHPFVNPSGLVSIPYLQNWIYPSSNLVDLARELSSVFGRDPPLFSQRPKPNPNPNYHPNQSSLGSVGNTGGGGGYPRPIVRPPQ
YPPYGSGGAVGKVEAEDAAEVYKRNVIDKLVENVHGDMLQLSKTREAEMESWFSAQSVLRGREEEFNKGLKEMRDKMEGLELHLQVVLMNTDVLEAWVRE
NKGKLKGGSEDIDVDNAFECVDVLSKQMLECTAVDMAIEDAVYSLEKAVQEGAMPFDQYLRNVRLLSREQFFNRATAAKVRAAQMQAQVAGMAARAPRYA
T

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12400 ELC, ATELC Ubiquitin-conjugating enzyme/R... Potri.003G191100
[exp]
0 1
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.013G025000
[exp]
2.23 0.9144 Pt-HAP5.3
AT4G10810 unknown protein Potri.002G173700
[exp]
4.00 0.8856
AT3G54540 ABCF4, ATGCN4 ATP-binding cassette F4, gener... Potri.008G003300
[exp]
4.58 0.8928 GCN4.3
AT3G54680 proteophosphoglycan-related (.... Potri.013G072200
[exp]
5.47 0.8833
AT3G19950 RING/U-box superfamily protein... Potri.015G028400
[exp]
6.92 0.8956
AT5G38710 Methylenetetrahydrofolate redu... Potri.004G106400
[exp]
7.48 0.8980
AT1G06570 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxyg... Potri.002G057400
[exp]
10.24 0.8965 PDS1.2
AT3G54300 ATVAMP727 vesicle-associated membrane pr... Potri.010G239900
[exp]
14.28 0.8990 Pt-VAMP727.2
AT3G13200 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 /... Potri.001G370366
[exp]
16.70 0.8544
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.006G033201
[exp]
16.91 0.8582

Potri.003G191100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.