Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 571 / 0 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 527 / 0 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14100 519 / 0 FUT8 fucosyltransferase 8 (.1) AT1G14070 510 / 2e-177 FUT7 fucosyltransferase 7 (.1) AT1G14080 493 / 1e-170 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15390 454 / 7e-155 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT1G14110 449 / 9e-154 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15370 446 / 1e-151 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 430 / 5e-147 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G74420 393 / 3e-131 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034100 [exp] 951 / 0 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 627 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 617 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 600 / 0 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 586 / 0 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 578 / 0 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 550 / 0 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 540 / 0 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 518 / 7e-180 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 508 / 2e-175 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10037152 [exp] 453 / 2e-156 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 456 / 7e-156 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 440 / 5e-149 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 421 / 5e-142 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 407 / 7e-137 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 404 / 8e-136 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [poplar] [flax] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G191200.2 pacid=42784578 polypeptide=Potri.003G191200.2.p locus=Potri.003G191200 ID=Potri.003G191200.2.v4.1 annot-version=v4.1 ATGGATATTTTTCAAATGGAAAGATCAGGGTATGGTTCAAAGAGGTTTCCAAAACTGGTGGTTTCGTTTTTGATAGCTTTCTGTCTGTTATACATGGTGT CCATGGTTTACAGAAGCTCGACTTTTGTTCTAATTGGGGAAGTTGCCAAAGATAATGGCACAGGAGAAGTGGCGGAAAATGTTACCACACCCTCAGGTAC CGAATCGGAAGACAAACATCCCTCTGGAACTGAGAGCATGGTTGTTGATAAATTGCTTGGTGGGCTTCTGGCTACAGGATTTGATGAAGAATCCTGCATA AGCAGGTACCAAGCGACCTCGTATCGCAAAACTTCACCTCATAAGCCCTCTGCCTATCTTGTTTCGAAACTGCGTAAATATGAAGATCTTCATAAGCGCT GCGGACCTAACACCGAATCCTACAAAAGAGCTTTGAAGAAATTGAGTTCTAGCCACATCAATGGCACTACAGACTGCAATTACATTGTTTGGACGCCTTC TAATGGCTTGGGGAATAGGATAATCAGCATGGCTTCATCATTTCTTTATGCGGTCCTCACAAACAGAGTCCTACTTGTTGATCATGGAACCGACATGGCT GGTATCTTTTGTGAGCCGTTCCCAAATACATCATGGTTATTGCCCATGGATTTTCCTCTCACGAATCAATTCTACAGCTTGCAACCAGGAAATGCTCACA GTTATGGGCACCTACTAAAGATTAACAACATGAACATCTCAACCGTGTCGCAGCCGCCATCATTTCTGCATATTTATTTAGCTTACAACTATGATAAACA CGATAAGCTTTTTTTCCAGGATCAAAATCAAGGTTTTCTCCAAAAAGTCCCTTGGTTGATTCTGAAGTCAGACCAATACTTTGTGCCTTACCTCTTCTTG ATCCCATCTTTCCAGCAAGAACTAGGCAAACTGTTTCCTGATAAAGAGACTGTTTTCCACCACTTGGTTCGCTATCTTTTCCACCCTTCAAATCAAGCCT GGGGACTAATCACCAGATTCTATCGTGCTTACTTGGCCAGTGCAGATCAGAAGATTGGTCTTCAAGTGAGGGTATTTGATAGAAAAGCGAGTCCGGTTAA TGTTGTTCTGGAGCAGATACTTGGCTGCATTAAAAAGGAAAAACTGCTGCCTCAAGTAGATGAGCAAAAACCTATAGCTTCCCCATCAAAAAACCAGACA TTAAGAGCTATTACCATAGCATCATTATATCCAGAATACTACGAGAGAATAAAGAGCATGTATTGGATGAAGCCAACGGTAAATGGAGATGTTATTGGTG TTTATCAGCCAAGTCACGAAGAGGTTCAACATTTTGGCAACAATATACACAATATGAAGGCATGGGCTGAAATAAGCATCCTAAGTTTGAGTGATATTCT GGTGACTAGTTCTTGGTCTACTTTCGGGTATGTAGCTCAAGGTCTAGGAGGATTGAAGCCATGGATCCTATACGTGCCTGCCGGAAACCAACCAACTGAT CAGCCTTGTCCACGAGGCATGTCTATGGAGCCATGCTTTCATTTTCCTCCTGATTATCACCGGATTCCAAATACCAGACAGCGACTTGATACTGGCTCCC TTGTTCCTCATGTCAGGCAGTGTGAGGATGCAAGCAAGGGAATAAAGCTGTTTAATGCTAAGCAACTTTAG
AA sequence Show only first row Show all	>Potri.003G191200.2 pacid=42784578 polypeptide=Potri.003G191200.2.p locus=Potri.003G191200 ID=Potri.003G191200.2.v4.1 annot-version=v4.1 MDIFQMERSGYGSKRFPKLVVSFLIAFCLLYMVSMVYRSSTFVLIGEVAKDNGTGEVAENVTTPSGTESEDKHPSGTESMVVDKLLGGLLATGFDEESCI SRYQATSYRKTSPHKPSAYLVSKLRKYEDLHKRCGPNTESYKRALKKLSSSHINGTTDCNYIVWTPSNGLGNRIISMASSFLYAVLTNRVLLVDHGTDMA GIFCEPFPNTSWLLPMDFPLTNQFYSLQPGNAHSYGHLLKINNMNISTVSQPPSFLHIYLAYNYDKHDKLFFQDQNQGFLQKVPWLILKSDQYFVPYLFL IPSFQQELGKLFPDKETVFHHLVRYLFHPSNQAWGLITRFYRAYLASADQKIGLQVRVFDRKASPVNVVLEQILGCIKKEKLLPQVDEQKPIASPSKNQT LRAITIASLYPEYYERIKSMYWMKPTVNGDVIGVYQPSHEEVQHFGNNIHNMKAWAEISILSLSDILVTSSWSTFGYVAQGLGGLKPWILYVPAGNQPTD QPCPRGMSMEPCFHFPPDYHRIPNTRQRLDTGSLVPHVRQCEDASKGIKLFNAKQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191200 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.016G121400 [exp]	1.00	0.9258	PtrAMT2-2
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.016G072600 [exp]	11.66	0.8546
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G003000 [exp]	15.19	0.8519
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	19.89	0.9050
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	25.80	0.8990
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	28.21	0.8929
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	33.68	0.8913	1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	36.22	0.8333
					Potri.001G130800 [exp]	39.19	0.8885
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	43.35	0.8872

Compare expression of checked genes

Potri.003G191200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.