Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 524 / 1e-180 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 491 / 4e-168 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14100 489 / 1e-167 FUT8 fucosyltransferase 8 (.1) AT1G14070 478 / 2e-163 FUT7 fucosyltransferase 7 (.1) AT1G14080 472 / 5e-161 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15390 464 / 2e-157 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 458 / 2e-155 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 428 / 7e-145 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 420 / 4e-141 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 402 / 2e-133 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191401 [exp] 697 / 0 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 683 / 0 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 582 / 0 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 577 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 571 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 565 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008696 [exp] 529 / 0 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10036776 [exp] 520 / 2e-178 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 474 / 4e-161 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10037152 [exp] 438 / 3e-149 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 418 / 5e-139 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 416 / 7e-139 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 388 / 7e-128 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 360 / 2e-117 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 354 / 4e-115 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 347 / 6e-112 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [poplar] [flax] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G191301.1 pacid=42785658 polypeptide=Potri.003G191301.1.p locus=Potri.003G191301 ID=Potri.003G191301.1.v4.1 annot-version=v4.1 ATGATGGAAATCTTTAAAGCTGCAAAAGAAAGATTGGGATTTAATTTCAGGAGGTGCACGACAATCTTGGTTTTGTCTTTCATTGTTTTGGCTGTGCTAG TGAGGGTCTTTGTCTCGTATCAAGACTCGGCATTTGATCTAATTGGGGGTTTAGCTAAAGCTAAGGTTTCTCCAGCAAATACTCAAGATGTTGCAGCATT AGGTTTTGCCTCAATAAATGATTCCTCTCAACCAACTAGCTTGCCTGATCAGAAGGTGCTTAATGAACAGCTGCCACCCAGATTTGGCAACGGATCAATT TCAAAAAATGAGTCCTCTCAGCCTACCAGCATACGTGATGACACACTGGTTAATGGACTTTTGGCTCCTGGATCTGGTGATGGATCAAGTTCAAAAAACG ATTCCTCTCAGCCTACCAGCGAGCCTGATGATAAACCTCTTTCCTCTCAGCCTACCAGCAAGCCTGATGATAAGCTGCTTGGTCAACCATTGGCTCCTGG ATTTGTTGAAGAATTAGGTTTGAAAACTGATTCCTCGCAACCTACCAAAATGGCTAATGATAAATTGCTTGACGGGCTTCTATCCCCTGGGTTTGATGAA AAATCCTGCTTGAGTAGATACCGTTCTTTCCTATACCGCAAAGCTTCTCAACATAAGCCCTCTCCCTATCTCCTTTCCAAGCTACGCGAGTATGAAGATC TTCATAAACGTTGCGGACCATACACCAGATCTTACAATGAAACATTAAAGAGACTCAAATCTAGCCATACAGGTAGTACTGGTGGGTGTAATTACATTGT CTGGTTGGGTTCTAACGGGATGGGGAACAGGATAATAAGCATGGCTTCAACATTTCTTTATGCTCTCCTTGCAAATCGAGTCCTACTTGTTGATCATGGC AGGGACATGACTCACCTCTTTTGCGAGCCATTTCCCAACACGTCATGGATATTGCCCATGGACTTCCCCATTAAAAAACAATTCCATACCTTGAAACAGA GACATGATCGATTCAGAGATATATCAGAGTCGTCGCCCCCATCATTTGTATATGTTAATATACCTCACGGTACTTATGATTTTGATGAGCTTTTCCTGTG TGAGCAGAGCAGAGCTCTCCTCGAAAGAGTTCCTTGGTTTATTCTATCGTCTGACCAATATTTTGCCCCATCTTTCTTCCTGAGCCCATCTTTCAAGCAA GAGGTAAGCAAGCTGTTCCCAGAAAAAGAAACCATTTTCCATCAATTGGGTCGCTATCTTTTCCACCCCTCCAATCAGGTTTGGAGAGTAATTACAAAGT TCTATCAGACTAATCTAGCGAAGGCAGAACAGAGAATTGGCCTCCAAATAAGAGTATTTAACCGCAAGACTAGTCCAGTTCAAGTGGTCATGGGTCAGAT ATTATCCTGTATGCTGAAGAAAAAGCTTCTTCCAGAAGTTGATACCCAGAACGCTGTACGTTCTTCTCCTCCAAATAATTCTTCTAAAACTATTTTAATA ACTTCCTTGTATTCAGACTACTATGAGAACATGAGTGCCATGTACCAGTCAAAACCAACTGTGACAGGTGAAGCGATCAGGGTTTGCCAGCCAAGCCACG AAGAATATCAACACAAAGCGGATAACCTGCACAACATGAAGGCGTGGGCAGAAATTTATCTGCTGAGCTTGAGTGATGTTCTAGTCACCAGTGCCGGGTC AACCTTTGGCTATGCTGCACAAGGTCTAGGAGGTTTGAAGCCATGGATGTTGATTAGACCAAAGAATAAAATGGTTCCAGATCCGCCTTGTCGACAAGAC AAATCCATGGACCCTTGTTTCCACTATGCTCCCAGTTATGAATGCAAGGCGAAGCACAAAACTGATTCTTCCACTGTTGTTCCTTATGTAAGGCATTGTG CAGATCGGCAGGCAGGAGTGAAGCTTTTTAATGATCATAAACGATTGTAG
AA sequence Show only first row Show all	>Potri.003G191301.1 pacid=42785658 polypeptide=Potri.003G191301.1.p locus=Potri.003G191301 ID=Potri.003G191301.1.v4.1 annot-version=v4.1 MMEIFKAAKERLGFNFRRCTTILVLSFIVLAVLVRVFVSYQDSAFDLIGGLAKAKVSPANTQDVAALGFASINDSSQPTSLPDQKVLNEQLPPRFGNGSI SKNESSQPTSIRDDTLVNGLLAPGSGDGSSSKNDSSQPTSEPDDKPLSSQPTSKPDDKLLGQPLAPGFVEELGLKTDSSQPTKMANDKLLDGLLSPGFDE KSCLSRYRSFLYRKASQHKPSPYLLSKLREYEDLHKRCGPYTRSYNETLKRLKSSHTGSTGGCNYIVWLGSNGMGNRIISMASTFLYALLANRVLLVDHG RDMTHLFCEPFPNTSWILPMDFPIKKQFHTLKQRHDRFRDISESSPPSFVYVNIPHGTYDFDELFLCEQSRALLERVPWFILSSDQYFAPSFFLSPSFKQ EVSKLFPEKETIFHQLGRYLFHPSNQVWRVITKFYQTNLAKAEQRIGLQIRVFNRKTSPVQVVMGQILSCMLKKKLLPEVDTQNAVRSSPPNNSSKTILI TSLYSDYYENMSAMYQSKPTVTGEAIRVCQPSHEEYQHKADNLHNMKAWAEIYLLSLSDVLVTSAGSTFGYAAQGLGGLKPWMLIRPKNKMVPDPPCRQD KSMDPCFHYAPSYECKAKHKTDSSTVVPYVRHCADRQAGVKLFNDHKRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191301 [exp]	0	1
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	5.00	0.7510	Pt-ARF1.11
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	5.65	0.7056
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Potri.004G022500 [exp]	6.32	0.6974
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.001G283000 [exp]	12.00	0.7016
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	17.66	0.6525	Pt-ARF6.3
AT5G38880			unknown protein		Potri.004G114600 [exp]	28.14	0.6738
AT5G47020			unknown protein		Potri.003G086200 [exp]	28.98	0.6907
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	34.11	0.6678
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Potri.001G126700 [exp]	34.69	0.6634
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	36.87	0.6080

Compare expression of checked genes

Potri.003G191301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.