Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 570 / 0 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT1G14100 533 / 0 FUT8 fucosyltransferase 8 (.1) AT2G03210 525 / 0 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 512 / 8e-178 FUT7 fucosyltransferase 7 (.1) AT1G14080 507 / 9e-176 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15390 476 / 1e-163 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 474 / 2e-162 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 455 / 1e-156 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 447 / 8e-153 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 399 / 2e-133 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090000 [exp] 624 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 618 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 617 / 0 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 591 / 0 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 580 / 0 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 565 / 0 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 545 / 0 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 535 / 0 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 511 / 7e-177 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 479 / 2e-166 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 460 / 1e-156 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10026128 [exp] 425 / 2e-143 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 416 / 3e-139 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 396 / 2e-132 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 395 / 1e-131 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 394 / 4e-131 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [poplar] [flax] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G191500.1 pacid=42785123 polypeptide=Potri.003G191500.1.p locus=Potri.003G191500 ID=Potri.003G191500.1.v4.1 annot-version=v4.1 ATGAAAAAATTCACAACTTCTAAGATGTCTGACATGGTTTCAAATGAATTTTCAGGGATGATCAGCACCATAAGAGATCAAACTTCCTGGAACAGGAAAG GCTTTCAATTCAAAGTGCAGAGAAATGGATATTGTTCAATAATCCCATTTGCTTGTTTGATAGTTTTTTCTATTCTAGTAATAGTCTTAATCGTTCAGCA GAGGAGTACAACATTCAAAGTTAATGGAGGAGATGCTAAAATTAATGCCTTGGCGGGAGGAGCTGCTCAAACTGAGACATCAGGAGTTGTAGATTCAGGA AATGTTTCATCTCAACAACTTCTTGACGAACTTTTTGCTCCTGGACATGACAAAGGATCTTGCTTAAGCCGGTATGAAGCCATCCTATTTCGGAAACCCT CCTCTCATAAGCCCTCTCCCTACCTCCTCTCCAAACTTAGGAACTATGAAAGTCTTCATAACCTCTGCGGGCCTTATACCGAAGCCTACAACAAAACCCT CGAGCAACTCAATTCTGGCCGTAAGGCCAGTACCACAGATTGTAACTATGTTGTCTATACACCTTTAAGTGGCCTAGGGAACAGGATGCTGACCATTGCC TCAGCATTTCTTTACGCTCTCCTCACAAACCGAGTCCTACTAGTGGAATTCGGAAGTGAAATTGCCGGTCTGTTTTGTGAGCCATTTCAGCAAACAACAT GGTTATTGCCTAGGGATTTTCCCTTAAGGAATCAGTTTGACAATTTCAGCCAGGAATATCCTCATACATATGGAAACATGCTGAAGAGTAGAATCATAAA CACTGCCGTGAAGTCTTCACCACCACCATTTCTTTATATTTATCTAGCTTACAACATTGATCGTTACGACGGGCTTTTTTACTGTGATCAAAATCAAGAT CAACTTGGAAAGGTCCCTTGGTTGGTTATAAAATCAAACCAGTACTTTGTTCCTTCTCTCTTCTTAGTCCCATCTTTTAAGCAGGAACTAAGCAAGTTGT TCCCTGATGAAGAAACTGTTTTTCATCACTTGGGTCGCTACCTTTTCCAACCCTCAAATGAAGCATGGGGACTTATCACTAGGTTCTATCGAGCTTACTT ATCCAAAGCAGATGAGACGATTGGCATCCAAGTACGAGTCTTCGATACTAAAGCTACTCCATTTAAAACAGTTATGGATCAGATTTTGTCCTGTACTCTA AAGGAGAAACTACTTCCTGAAGTCTTGGATGTGCAAAATTCTGCTGCTTCTTTGTCCAATAACCAAGGCTTGAAAGCTGTTTTAGTAACATCTTTGTACT CAGAGTACTATGAGCATATAAAGGGAATGTATTGGACAAAACCAACTGTGAGTGGGGAGGTGATTGGTGTTTACCAGCCAAGCCATGAAGAGCATGAAAT TTACGGGAATAACATGCACAGCATGAAGGCATGGACTGAAATTTATCTGCTAAGTATGAGTAATGTACTGATTACAAGTTCTTGGTCAACATTTGGTTAT GTGGCTCAAAGTCTAGGTGGTTTGAAGCCATGGATGCTTTACAGGCCTTTGAACGGAACAACCCCAGATCCTCCTTGTGTGCAAGCTATGTCAATGGAGC CTTGCTTTCATTTCCCTCCAAGCTATGGCTGCAAGGCAGATGTCTACATTGGTCCCAGTGCTATTGTTCCTCATGTGAAGCATTGTGAGGATGTGGAATG GGGATTAAAGCTCGTTAAAGATCATTGA
AA sequence Show only first row Show all	>Potri.003G191500.1 pacid=42785123 polypeptide=Potri.003G191500.1.p locus=Potri.003G191500 ID=Potri.003G191500.1.v4.1 annot-version=v4.1 MKKFTTSKMSDMVSNEFSGMISTIRDQTSWNRKGFQFKVQRNGYCSIIPFACLIVFSILVIVLIVQQRSTTFKVNGGDAKINALAGGAAQTETSGVVDSG NVSSQQLLDELFAPGHDKGSCLSRYEAILFRKPSSHKPSPYLLSKLRNYESLHNLCGPYTEAYNKTLEQLNSGRKASTTDCNYVVYTPLSGLGNRMLTIA SAFLYALLTNRVLLVEFGSEIAGLFCEPFQQTTWLLPRDFPLRNQFDNFSQEYPHTYGNMLKSRIINTAVKSSPPPFLYIYLAYNIDRYDGLFYCDQNQD QLGKVPWLVIKSNQYFVPSLFLVPSFKQELSKLFPDEETVFHHLGRYLFQPSNEAWGLITRFYRAYLSKADETIGIQVRVFDTKATPFKTVMDQILSCTL KEKLLPEVLDVQNSAASLSNNQGLKAVLVTSLYSEYYEHIKGMYWTKPTVSGEVIGVYQPSHEEHEIYGNNMHSMKAWTEIYLLSMSNVLITSSWSTFGY VAQSLGGLKPWMLYRPLNGTTPDPPCVQAMSMEPCFHFPPSYGCKADVYIGPSAIVPHVKHCEDVEWGLKLVKDH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191500 [exp]	0	1
					Potri.013G045500 [exp]	1.41	0.9802
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	2.00	0.9740
AT5G06070	C2H2ZnF	RAB, RBE	RABBIT EARS, C2H2 and C2HC zin...		Potri.010G199800 [exp]	2.82	0.9645
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	4.24	0.9670
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134475 [exp]	6.48	0.9502
					Potri.005G081100 [exp]	6.70	0.9556
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	12.00	0.9414
					Potri.001G405600 [exp]	13.19	0.9549
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	17.88	0.9362
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G021100 [exp]	17.94	0.9399

Compare expression of checked genes

Potri.003G191500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.