Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26920 276 / 2e-83 Ubiquitin-associated/translation elongation factor EF1B protein (.1) AT5G12120 260 / 1e-77 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G033600 [exp] 845 / 0 AT2G26920 267 / 2e-80 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.009G021900 [exp] 412 / 8e-135 AT2G26920 412 / 3e-135 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.001G225200 [exp] 403 / 8e-132 AT2G26920 424 / 1e-140 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026781 [exp] 400 / 3e-130 AT2G26920 468 / 3e-157 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10036096 [exp] 392 / 2e-127 AT2G26920 473 / 6e-159 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10024080 [exp] 204 / 9e-58 AT2G26920 181 / 3e-50 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Lus10041640 [exp] 202 / 4e-57 AT2G26920 179 / 3e-49 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Potri.003G191600.1 pacid=42784781 polypeptide=Potri.003G191600.1.p locus=Potri.003G191600 ID=Potri.003G191600.1.v4.1 annot-version=v4.1 ATGTCTCCTGCATCAAAATCCAATACCAAGTCCAAGGATAAGACCTCTGCAAAGTCTGCTATAGAACAACCAAAAGCATCCGTTAAGTCTTCTGGATCAA CCAACTCTGTAACTGGGAATCCAGCGAATGCTTATAATCCAATTTCTGGGACTTTTCACACATTAGAAATACCAGCTGCTGCTGCTTTCCCGCCCTTGCA TGATAATGGTCGTTTCAGAAATATAGATGACACAGATGAGCATTCTAGCAGCCCACATGGAACAGTTTCTGAGTATGATTCAGTTTCCAACAATGGGAGC TGCTCTGGTGAGTCAGAGGACATTAAAGAGAAGATAATCAATTCTACTCGACAGGAAACGATACCTGGCTTAGACAGCGACCGACGTGAGAAGATCCGTC AGAGGAATGAGAAAAAGCATCAGCGTCAGAGAGAGAGGAGGGCGCAAGAGTTGCATGACCGATGCAGTGGGTATCTGATGTCAAGAAAACTAGAAAGGCT TTCACAACAGCTTGTGGCAATGGGTTTTTCTCATGAGCGGGCAATCTTGGCCCTTATGCTGAATGAGGGCAGGGTAGAAGAATCGGTAAACTGGCTTTTT GAGGGAAGTGAGGAGGAAGCTCAAAAGGACTCTAAGCTTGAAAGTGGTGGTAACCTAAAAATTGACATAAATGAGGAGCTCGCTCAAATCTCAGCAATGG AGATGAGATACAAATGCTCAAAGCAGGAGGTTGAAAGAGCAGTGGTTGCTTGTGAAGGGGATCTAGTGAAGGCAGAAGAGACCCTGCAGCCACAGAAGCA GGAACCACCTGCAACTCCACCAAGGCAAGAATATACTGCCGATACGAATAACCTGAGGAGACTGCATGAAAAGCCTGTACCTGTGACTTCAGTTACAGCA CAACAGAGAATGAATGAACAGGATTTCAACTACAAAACAGCAATTCCAGTGCCAACGTATTCAGAACCTGGGAGTAGAAACTTGCAACCTCTGAATCAGC CCAAGCCACTAGCAGACAAGAGGTGGGGCGCAACAGGATCGAGCCCTGCATTCTCATCATCTATGGGACCATCCATGCAAGTAGCACCTCCATCAACAAA ACTTGATGTCCAGCTTGGTTTTACTGAAGGAGTGGGCACAACAGGATCGAGCTCTGCATTCTCATCATCTATGGGACCATCCATGCAAGTAGCACCTCCA TCATCTATGGGACCATCCATGCAAGTAGCACCTCCATCAACAAAACTCGGTGTCCAGCTTGGTTTTACTGGAAATGAGAGGAAAAATGTGCAGCAGATTG TGAGGGAACCAGTCAGCCCTCAATCTATGAATGCCAAACAAAATACAGTCCCTTACGCAAGTGCCACTCCTTCAGTAACAGCTGGATGGTATTCAAATAA TGTTCCAGGTGTTGAACATATGCGGTCAAATGTTAAGTTGCTTTCAAATCAGAGCACTGGAAGCCTTGGTCTTGTAAATCAGAGCTCACAACAATTTTAC CATCCAGTGTCATACAAACAAAACCCGTTCCCTTATAGCGGCCCAGTAAATTATACATCAAATGGACTTGGAGGAACAAGGTCTCCTTCACTTACAGTTC CATCTCAGTTGCAAGGTTCATATGGTAAAACGACTGCATCTTTGCCTTCTCTAGCAGCACCGTCCTCACTTGGTTTGTTCATTGGCTGGGGCTCAGCTGG AACTTTAGGTTCTTCACATGTTGATTGGAATACAGGAGGCCTGATGTCAGAATTTGATTACACCAGCATCGATTGGACTTTGGATTCGAACATGTTATCC TCTAAGTCAAATGGGTTGTGGCTGGGTCTGTCTTCATTACTTAGGAACACGTCTAGCACAAGGACGAGCAGTACAAATAGTTCCTTCCTATCAGGGTTAC GGGACAGTGGAGTGGCTAAAGAAACATCATCCTCAGCTGGTTCGCGCGAGTGGACCTCTCCTTTCGCAGGCAAGGACATCTTTAGTTTGCCTAGGCAGTT TGTAACTTCTCCATCTCCTTAG
AA sequence Show only first row Show all	>Potri.003G191600.1 pacid=42784781 polypeptide=Potri.003G191600.1.p locus=Potri.003G191600 ID=Potri.003G191600.1.v4.1 annot-version=v4.1 MSPASKSNTKSKDKTSAKSAIEQPKASVKSSGSTNSVTGNPANAYNPISGTFHTLEIPAAAAFPPLHDNGRFRNIDDTDEHSSSPHGTVSEYDSVSNNGS CSGESEDIKEKIINSTRQETIPGLDSDRREKIRQRNEKKHQRQRERRAQELHDRCSGYLMSRKLERLSQQLVAMGFSHERAILALMLNEGRVEESVNWLF EGSEEEAQKDSKLESGGNLKIDINEELAQISAMEMRYKCSKQEVERAVVACEGDLVKAEETLQPQKQEPPATPPRQEYTADTNNLRRLHEKPVPVTSVTA QQRMNEQDFNYKTAIPVPTYSEPGSRNLQPLNQPKPLADKRWGATGSSPAFSSSMGPSMQVAPPSTKLDVQLGFTEGVGTTGSSSAFSSSMGPSMQVAPP SSMGPSMQVAPPSTKLGVQLGFTGNERKNVQQIVREPVSPQSMNAKQNTVPYASATPSVTAGWYSNNVPGVEHMRSNVKLLSNQSTGSLGLVNQSSQQFY HPVSYKQNPFPYSGPVNYTSNGLGGTRSPSLTVPSQLQGSYGKTTASLPSLAAPSSLGLFIGWGSAGTLGSSHVDWNTGGLMSEFDYTSIDWTLDSNMLS SKSNGLWLGLSSLLRNTSSTRTSSTNSSFLSGLRDSGVAKETSSSAGSREWTSPFAGKDIFSLPRQFVTSPSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26920			Ubiquitin-associated/translati...		Potri.003G191600 [exp]	0	1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	10.48	0.8576
AT1G80510			Transmembrane amino acid trans...		Potri.001G204400 [exp]	11.31	0.8401
AT3G51850		CPK13	calcium-dependent protein kina...		Potri.016G117200 [exp]	11.78	0.8647	CPK13.2
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	31.30	0.7635	RHG4.2
AT2G44660			ALG6, ALG8 glycosyltransferase...		Potri.014G053200 [exp]	34.29	0.7916
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	42.34	0.8207
AT4G01897			unknown protein		Potri.002G191200 [exp]	45.78	0.8254
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	47.49	0.8187
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	63.92	0.8109
AT4G08330			unknown protein		Potri.014G197000 [exp]	66.00	0.7961

Compare expression of checked genes

Potri.003G191600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.