Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33720 109 / 4e-28 AP2/B3-like transcriptional factor family protein (.1) AT1G78640 92 / 6e-21 unknown protein AT4G02870 74 / 5e-15 unknown protein AT1G13260 53 / 5e-08 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G25560 53 / 6e-08 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 53 / 8e-08 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT3G25730 51 / 3e-07 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT4G01500 49 / 2e-06 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT5G26805 47 / 2e-06 unknown protein AT4G03170 45 / 2e-05 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191901 [exp] 448 / 1e-161 AT2G33720 119 / 7e-32 AP2/B3-like transcriptional factor family protein (.1) Potri.004G099600 [exp] 242 / 3e-81 AT2G33720 112 / 7e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 50 / 4e-07 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.010G129200 [exp] 50 / 7e-07 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 46 / 1e-05 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.011G054000 [exp] 46 / 1e-05 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.016G074500 [exp] 44 / 4e-05 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.006G186301 [exp] 44 / 6e-05 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.001G452200 [exp] 44 / 6e-05 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027591 [exp] 94 / 2e-22 AT4G02870 75 / 2e-15 unknown protein Lus10008543 [exp] 52 / 1e-08 AT4G02870 53 / 3e-09 unknown protein Lus10041487 [exp] 49 / 2e-06 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 45 / 1e-05 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10021707 [exp] 45 / 3e-05 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021326 [exp] 42 / 0.0003 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G191700.1 pacid=42785261 polypeptide=Potri.003G191700.1.p locus=Potri.003G191700 ID=Potri.003G191700.1.v4.1 annot-version=v4.1 ATGGAGAAACAACAACAATTTTGTGTTTTGAGTCCTTGTTTTCCTTCCAGGAACACCAATAATCCTAAGAAAAGAAAAGAATGTGAATGTCAACAAGCCG AGAGAGAAGTGTTTGCTGGGTCACAGCCAATTTTCAATGAGCATCCTTTTTGGTTCAAGAAGCCAAAAACAAGCAGCGGAATTGGTTCCATTGTTGTTGC TTCAAGAAATCCAGGGAGGGTTTTAAAGGAATCAAAGCTTTTTGATGAAAACTGGGTTTTCAAGAACTCTGTTGATCCTGATTCAAGAAACAATGAATCT GGAGAAGAGTTGGAGAGAAGGGTGGCTTTTAATCTTAGGACGATGAGATCGTCTTTTAGCCTTGGGGATTTGCTAGAGGAGAGGTCTCGTGGGGTATCAA CTCAACTAAGTCTGTATCATCATGACCCATTCGAGATCAAGAAGAAGATGAAGCCAAGTGATCTGGGTAATCTATGCAGGCTGCTTGTGTCTGCAGATTT GGTTGAGAAACATATCCTACCTTTCTTGAACGAGGATCAAACTAAACAGGTCTGGGTTTGGGATATCGATACTGGAAGTATGCATCAGTTGGTCTTCAAA AGATGGAGCACTTCTAAAAGCTATATTTTCAATGATGGCTGGACAAAGCACTTCGTTAAAAGGAGGAATTTGAGGGAAAGCGATGAAATTGGACTCTACT GGGACAATGATCAGTCAAGATTTCACTTCAGTGTTCTTAGTAGGGCTGCTGCTGTGGCCAAGATTAGAAATTAG
AA sequence Show only first row Show all	>Potri.003G191700.1 pacid=42785261 polypeptide=Potri.003G191700.1.p locus=Potri.003G191700 ID=Potri.003G191700.1.v4.1 annot-version=v4.1 MEKQQQFCVLSPCFPSRNTNNPKKRKECECQQAEREVFAGSQPIFNEHPFWFKKPKTSSGIGSIVVASRNPGRVLKESKLFDENWVFKNSVDPDSRNNES GEELERRVAFNLRTMRSSFSLGDLLEERSRGVSTQLSLYHHDPFEIKKKMKPSDLGNLCRLLVSADLVEKHILPFLNEDQTKQVWVWDIDTGSMHQLVFK RWSTSKSYIFNDGWTKHFVKRRNLRESDEIGLYWDNDQSRFHFSVLSRAAAVAKIRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33720			AP2/B3-like transcriptional fa...		Potri.003G191700 [exp]	0	1
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	13.45	0.8038
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	59.39	0.8174
					Potri.006G102050 [exp]	64.15	0.8174
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	92.33	0.8174
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	93.91	0.8174
					Potri.001G169351 [exp]	102.87	0.8174
					Potri.001G196900 [exp]	105.69	0.8174
					Potri.001G276804 [exp]	108.44	0.8174
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	109.79	0.8174
					Potri.001G330250 [exp]	111.12	0.8174

Compare expression of checked genes

Potri.003G191700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.