Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76750 115 / 1e-33 Protein of unknown function (DUF1278) (.1) AT2G21750 93 / 3e-25 Protein of unknown function (DUF1278) (.1) AT4G39340 91 / 2e-24 Protein of unknown function (DUF1278) (.1) AT2G21740 90 / 3e-24 Protein of unknown function (DUF1278) (.1) AT5G64720 53 / 2e-09 Protein of unknown function (DUF1278) (.1) AT4G35165 46 / 2e-07 Protein of unknown function (DUF1278) (.1) AT2G14378 45 / 9e-07 Protein of unknown function (DUF1278) (.1) AT5G54062 43 / 8e-06 unknown protein AT3G48675 42 / 8e-06 Protein of unknown function (DUF1278) (.1) AT5G52975 41 / 2e-05 Protein of unknown function (DUF1278) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077000 [exp] 164 / 3e-53 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 156 / 3e-50 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1) Potri.001G306700 [exp] 108 / 1e-31 AT1G76750 113 / 3e-33 Protein of unknown function (DUF1278) (.1) Potri.001G306600 [exp] 92 / 8e-25 AT2G21740 112 / 7e-33 Protein of unknown function (DUF1278) (.1) Potri.011G078401 [exp] 74 / 4e-18 AT1G76750 54 / 3e-10 Protein of unknown function (DUF1278) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004598 [exp] 130 / 1e-39 AT1G76750 131 / 2e-39 Protein of unknown function (DUF1278) (.1) Lus10004548 [exp] 127 / 3e-38 AT1G76750 130 / 4e-39 Protein of unknown function (DUF1278) (.1) Lus10019549 [exp] 42 / 2e-05 AT5G51105 49 / 4e-08 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [poplar] [flax] Prolamin PF05617 [poplar] [flax] Prolamin_like Prolamin-like
Representative CDS sequence Show only first row Show all	>Potri.003G191800.2 pacid=42786901 polypeptide=Potri.003G191800.2.p locus=Potri.003G191800 ID=Potri.003G191800.2.v4.1 annot-version=v4.1 ATGCAGCAGCTTGGGCTGCTACAAGGCCAAGGCAAGACCGCTGGCGCTTCAATCTCAAACCTTTCGACTCGCTTAAAATTAGATGAAGAGTCATCAAACT GCTGGGACTCTTTGTTGCAACTACAAGCATGTACTGGGGAGATTGTTCTTTTCTTCCTTAACGGCGAGACTCAACTTGGTCATAGCTGTTGCCAAGCTTT GAGCACCATTGGTGAACATTGCTGGCCTAACATGATTGATACACTAGGATTTACCACTGAAGAGAGCCAAATTCTTGAAGGCTACTGTGATAAAGCTGCC GATCCCACTACTCCATCACCGTCAGCACCATCTGTGGTGCCTGTTGAGATTGTTCCAAAGCAAACTTTGGTTCCTTGA
AA sequence Show only first row Show all	>Potri.003G191800.2 pacid=42786901 polypeptide=Potri.003G191800.2.p locus=Potri.003G191800 ID=Potri.003G191800.2.v4.1 annot-version=v4.1 MQQLGLLQGQGKTAGASISNLSTRLKLDEESSNCWDSLLQLQACTGEIVLFFLNGETQLGHSCCQALSTIGEHCWPNMIDTLGFTTEESQILEGYCDKAA DPTTPSPSAPSVVPVEIVPKQTLVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76750			Protein of unknown function (D...		Potri.003G191800 [exp]	0	1
					Potri.015G058750 [exp]	5.91	0.6035
					Potri.002G093000 [exp]	12.12	0.5383
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G010200 [exp]	23.23	0.4986
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.002G038100 [exp]	29.49	0.4260	Pt-GY4.1
AT3G07070			Protein kinase superfamily pro...		Potri.019G051600 [exp]	46.30	0.5049
AT4G16270			Peroxidase superfamily protein...		Potri.008G103200 [exp]	53.60	0.4767
AT5G27110			Tetratricopeptide repeat (TPR)...		Potri.009G053632 [exp]	73.66	0.4064
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Potri.015G093000 [exp]	91.84	0.4099
AT2G34610			unknown protein		Potri.011G083600 [exp]	102.96	0.3993
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047800 [exp]	135.38	0.4087

Compare expression of checked genes

Potri.003G191800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.