Plant FIBer expression Database

Pt-CI1.2 (Potri.003G192200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CI1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12490 303 / 3e-105 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
AT5G05110 228 / 2e-75 Cystatin/monellin family protein (.1)
AT2G40880 138 / 1e-41 ATCYSA, FL3-27 cystatin A (.1)
AT5G12140 104 / 8e-29 ATCYS1 cystatin-1 (.1)
AT5G47550 60 / 2e-11 Cystatin/monellin superfamily protein (.1)
AT2G31980 59 / 4e-11 AtCYS2 PHYTOCYSTATIN 2 (.1)
AT4G16500 55 / 8e-10 Cystatin/monellin superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G032900
[exp]
365 / 4e-130 AT3G12490 276 / 2e-95 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.016G030900
[exp]
262 / 7e-89 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G033201
[exp]
255 / 1e-86 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.001G225800
[exp]
139 / 2e-42 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.009G022300
[exp]
130 / 8e-39 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Potri.006G014500
[exp]
52 / 7e-09 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1)
Potri.002G235800
[exp]
50 / 8e-08 AT2G31980 96 / 5e-26 PHYTOCYSTATIN 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026117
[exp]
293 / 5e-101 AT3G12490 261 / 2e-88 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10008702
[exp]
266 / 3e-90 AT3G12490 241 / 9e-81 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10026779
[exp]
137 / 2e-41 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Lus10041257
[exp]
57 / 3e-10 AT2G31980 72 / 9e-17 PHYTOCYSTATIN 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0121 Cystatin PF16845 SQAPI Aspartic acid proteinase inhibitor
Representative CDS sequence
>Potri.003G192200.1 pacid=42785026 polypeptide=Potri.003G192200.1.p locus=Potri.003G192200 ID=Potri.003G192200.1.v4.1 annot-version=v4.1
ATGATCTCCCCTTCCTTCATCTCTCCATTACTCACACTAGCTGTTGTCCTTGCCGTTACAATCACCCCTCAAATTTCTGCCTCTGGAGGATTCTGTCAGG
AGAAAATGGCCACTCTCGGCGGCGTTCACGACTCTCAAAGCTCCCAAAATAGCGCCGAGATCGACAGCCTCGCTCGCTTCGCTGTCGATGAACACAACAA
GAAAGAGAATGCGATATTGGAGTTTGCGAGGGTAGTGAAGGCGAAAGAGCAAGTGGTTGCGGGGACAATGCATCATCTTACGATTGAAGCGGTTGAAGCG
GGGAAGAAGAAGCTTTATGAGGCCAAAGTCTGGGTTAAGCCGTGGCTTAACTTCAAGGAGTTGCACGAGTTCAAGGATGCCGGTGATGTTCCTGTGTTTA
CCTCCTCTGATCTCGGTGTCAAGAGAGATGGTCATGCTCCTGGATGGCGAGCAGTGCCAGTGCATGATCCTTCAGTCCAAGATGCAGCAGTTCATGCTTT
GAAGTCCATCCAGCAGAGGTCCAACTCTCTGTTCCCTTATGAACTTCAAGAGGTCGTTCATGCAAATGCTGAGGTGGTAGATGATTCTGCAAAATTTGAT
ATGCTTCTCAAGGTGAAGAGGGGAAGCACTGAAGAGAAATTCAAGGTATTGGTGCACAAGAACAATGAGGGCAACTACCATCTCAATCAGATGGAGCCAC
ATGCCTGA
AA sequence
>Potri.003G192200.1 pacid=42785026 polypeptide=Potri.003G192200.1.p locus=Potri.003G192200 ID=Potri.003G192200.1.v4.1 annot-version=v4.1
MISPSFISPLLTLAVVLAVTITPQISASGGFCQEKMATLGGVHDSQSSQNSAEIDSLARFAVDEHNKKENAILEFARVVKAKEQVVAGTMHHLTIEAVEA
GKKKLYEAKVWVKPWLNFKELHEFKDAGDVPVFTSSDLGVKRDGHAPGWRAVPVHDPSVQDAAVHALKSIQQRSNSLFPYELQEVVHANAEVVDDSAKFD
MLLKVKRGSTEEKFKVLVHKNNEGNYHLNQMEPHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Potri.003G192200
[exp]
0 1 Pt-CI1.2
AT5G02020 SIS Salt Induced Serine rich, unkn... Potri.006G092400
[exp]
3.31 0.7743
AT4G25433 peptidoglycan-binding LysM dom... Potri.014G077900
[exp]
6.00 0.7416
AT5G57660 CO COL5, ATCOL5 CONSTANS-like 5 (.1) Potri.018G096084
[exp]
11.87 0.7517
Potri.003G152300
[exp]
12.00 0.7209
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.004G001300
[exp]
15.62 0.7494 CES1.1
AT2G46140 Late embryogenesis abundant pr... Potri.002G165000
[exp]
17.14 0.7612 PM22.2
AT1G18210 Calcium-binding EF-hand family... Potri.012G048200
[exp]
20.49 0.7434 Pt-CBL1.1
Potri.003G152250
[exp]
35.67 0.6977
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.013G005800
[exp]
43.71 0.7141
Potri.002G057450
[exp]
46.73 0.7170

Potri.003G192200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.