Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14630 79 / 2e-15 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT4G13310 79 / 3e-15 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT4G13290 77 / 7e-15 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT5G24950 77 / 7e-15 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G61880 76 / 2e-14 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G13710 76 / 2e-14 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT3G14640 75 / 4e-14 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14650 74 / 1e-13 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT5G09970 73 / 2e-13 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT3G14660 72 / 3e-13 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032800 [exp] 946 / 0 AT1G75130 82 / 2e-16 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.004G019000 [exp] 81 / 8e-16 AT1G11600 645 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1) Potri.003G146800 [exp] 80 / 9e-16 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.005G084500 [exp] 79 / 2e-15 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 78 / 6e-15 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G175200 [exp] 78 / 6e-15 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 76 / 2e-14 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G060900 [exp] 76 / 3e-14 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.011G117600 [exp] 76 / 3e-14 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041637 [exp] 438 / 5e-149 AT1G34540 64 / 1e-10 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) Lus10024083 [exp] 338 / 7e-111 AT4G37410 54 / 1e-07 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) Lus10033044 [exp] 81 / 9e-16 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10042487 [exp] 79 / 2e-15 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036627 [exp] 79 / 3e-15 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10008423 [exp] 78 / 8e-15 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10026178 [exp] 76 / 2e-14 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10025006 [exp] 72 / 7e-14 AT3G14610 228 / 4e-72 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) Lus10017334 [exp] 73 / 2e-13 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10035844 [exp] 73 / 3e-13 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G192300.2 pacid=42785954 polypeptide=Potri.003G192300.2.p locus=Potri.003G192300 ID=Potri.003G192300.2.v4.1 annot-version=v4.1 ATGAATTCAATTTTGAAGTCAGTGAACGGTTTCATTTCATCGGAATCCGCAAGAGAGTATGCGAAGAAGGAATTCAATGCGATTCTATGGATCGCCTTGA TTACCATTACCGCTCTTTTGCTTGATAAGGTCTTTACGCTGTTTAGATTATGGTCCAAAGCTAGTAAGATCCCTGGACCGCCTTGTAATTCCTTTTTTGG CCATGGAAACCTCGGTTCTCGTGAGAATTTCATCGATCTTTTATCGGAGTCGCATGATAAATATGGATCAGTTTTCAAGTTGTGGTTGGGGCCAACTCAG CTTTTGGTATCTATGAAGGACCCAACCCTTATCAAAGATATGCTTTCGAAGGCTGGAGATAAATTGCCTTGCATTGGGAAGGCATTTCGTTTGGCCTTTG GACGATCAAGTCTCTTCTTTTGCTCATATGACCAGGCACAAAAGGGAAGAGAATCACTAGCGTTGGAATTGGATGATAAAATGCTTGGGAGAGCGAATGT AATCCCTAAAAATGTTGTGGACTGTATCATGGAAGGAGTCGATGCTAGTATGAGCACGGGAAGTGTTGATTGTAAATTAATTTCACAGCATATGGCTTTT ACCATTTTGGGGACCACGCTTTTTGGAGATACATTCCTGGCTTGGTCCAAGGCAACTTTTTATGAGGAGCTTCTGATGATGATTGCTAAAGATGCTTCCT TTTGGGCTTCATATAGATTTACACCTTTCTGGAAACGGGGATTTTGGAGGTACCAGTCATTGTGCACGGAATTGAAATGCTTAACTCTAGACATTGTTCA ACAGTGTGGAAAAAATTACAAACTATTTTGCCATATGGATCAAAACTCTCACATTGGAACTGCAAAAGTAGGAATAAAGGCTGCATCTGGTGCACCACCT TCTTCCGGTGTTGAGATGCAAGATAATTTTTTCTATCAGGAGCTTGGTGGTGATCTTATTGCAAGAGAAGAACCATGTGGAAATATTATGGGTTTGATGT TTCATGGATGCATAGCCACTACAAGTTTAATTGGTAGTATCCTGGAGAGGCTTGTTGCAGATGCAGAGATACAGGATAAGATATATTCTGAGATAATGAA GGTAAAGAAGGGTTCAGTGAGAGAAGATCAAGATGTTGAGGAAATGCTTTTGTTATTGGCAACTATTTATGAATCAGCCCGTCTTCTGCCAGCAGGACCT TTGCTGCAGAGATGCTCTTTGAAAGATGATTTGATTCTTAAAAATGGTATGTTAATACCAGCTGGAGCACTACTTGTTGTGCCTGCACAATTGCTGCAGA TGGATGGTTCTAGTTGGGGCAGTGATGCTAGCAAATTTAATCCATATCGATTTTTATCAAAAGCTGGAAAGGGCTCTGATTTGGTGCAGGATACATCATT TACAGAAGAAGCTGCAGATCCAATTCCGTGTTCATTCGTTTTGAATGATCCAAATGATGATGCAGCATTTCTTCCCTTCGGTTCTGGCATGCGGACTTGT GTGGGTCAGAAATTTGTAATCCGTGGAGTTGCCACTTTGTTTGCTTCATTGCTTGAACGCTATGAGGTAAGGCCCCGTCCTCAATTGGGAAATGACCCAA AATCAACAACTAATCCGGAGATAGTCTTTGTGAAAAGAAGCCGCTGA
AA sequence Show only first row Show all	>Potri.003G192300.2 pacid=42785954 polypeptide=Potri.003G192300.2.p locus=Potri.003G192300 ID=Potri.003G192300.2.v4.1 annot-version=v4.1 MNSILKSVNGFISSESAREYAKKEFNAILWIALITITALLLDKVFTLFRLWSKASKIPGPPCNSFFGHGNLGSRENFIDLLSESHDKYGSVFKLWLGPTQ LLVSMKDPTLIKDMLSKAGDKLPCIGKAFRLAFGRSSLFFCSYDQAQKGRESLALELDDKMLGRANVIPKNVVDCIMEGVDASMSTGSVDCKLISQHMAF TILGTTLFGDTFLAWSKATFYEELLMMIAKDASFWASYRFTPFWKRGFWRYQSLCTELKCLTLDIVQQCGKNYKLFCHMDQNSHIGTAKVGIKAASGAPP SSGVEMQDNFFYQELGGDLIAREEPCGNIMGLMFHGCIATTSLIGSILERLVADAEIQDKIYSEIMKVKKGSVREDQDVEEMLLLLATIYESARLLPAGP LLQRCSLKDDLILKNGMLIPAGALLVVPAQLLQMDGSSWGSDASKFNPYRFLSKAGKGSDLVQDTSFTEEAADPIPCSFVLNDPNDDAAFLPFGSGMRTC VGQKFVIRGVATLFASLLERYEVRPRPQLGNDPKSTTNPEIVFVKRSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13310		CYP71A20	"cytochrome P450, family 71, s...		Potri.003G192300 [exp]	0	1
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	1.73	0.8863
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	2.82	0.8724
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.010G114000 [exp]	5.83	0.8870	MYB165
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	8.12	0.8690
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.004G046600 [exp]	13.85	0.8566
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	14.07	0.8528
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.005G049300 [exp]	15.96	0.8423
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	20.12	0.8700
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Potri.019G054300 [exp]	21.49	0.8596
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	22.22	0.8319

Compare expression of checked genes

Potri.003G192300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.