Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 546 / 0 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 418 / 2e-145 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 394 / 8e-136 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 365 / 2e-124 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 347 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 338 / 6e-114 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 337 / 2e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 335 / 4e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 317 / 9e-106 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G13670 308 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032500 [exp] 720 / 0 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 566 / 0 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 563 / 0 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 378 / 1e-129 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 357 / 1e-121 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G176200 [exp] 350 / 8e-119 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 339 / 3e-114 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 338 / 4e-114 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 334 / 5e-113 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041634 [exp] 620 / 0 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 619 / 0 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 613 / 0 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 590 / 0 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 579 / 0 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 352 / 2e-119 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 350 / 1e-118 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 341 / 6e-115 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 338 / 4e-114 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 338 / 5e-114 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.003G192500.1 pacid=42784572 polypeptide=Potri.003G192500.1.p locus=Potri.003G192500 ID=Potri.003G192500.1.v4.1 annot-version=v4.1 ATGAAGAACTTAGGGTGTTGCAGCAAGTTTCTTGAGAGTTCTAAGCCCTACTTTGCCATGATCGCCTTACAATTTGGTTATGCTGGCATGAATATTATAA CAAAAGTGTCACTTAACCGTGGTATGAGCCACTATGTCCTTGTGGTTTATCGCCATGCCTTTGCCACTGCAGTCATTGCTCCATTTGCTTTGTTTTTTGA GAGGAAAATGCAACCGAAGATCACCTTTCCTGTTTTCATGCAGATATTTGTCCTTGCCCTTCTTGGACCTGTGATAGACCAGAACTTTTACTATGCTGGT CTGAAGTATACATCCCCAACTTTCTCCTGTGCAATGAGCAACATGCTTCCTGCTATGACATTTGTCATGGCAGTCATATTCCGGATGGAGAAACTGGACA TAAAGAAGGTGAGATGCCAAGCGAAGCTGCTGGGAACTCTAGTGACAGTTGCCGGGGCAATGTTTATGACCTTATACAAGGGTCCTATTGTAGAGATGCT GTGGTCTAAGCATATCCATCCACGTAAATCCTATGTGACTGATACCACAGGGACGACTGACAAAGACTGGTTCAAGGGCTCCATTCTGCTTATCATTGCT ACTCTTGCTTGGGCTTCCTTGTTTGTTTTGCAAACCAAAGCATTGAAGACATATAAGAACCACCAGCTCACTCTCACGTCACTTGTGTGCTTCATTGGCA CCCTACAAGCTATTGCTGTGACATTTACGATGGAGCACAAGAGCTCTGTTTGGAGAATTGGCTGGGACATGAACCTCCTTGCTGCTGCCTATGCTGGGAT AGTGACATCAAGCATCTCATACTATGTCCAAGGATTGGTGATAAAGAAAAAAGGTCCAGTTTTTGCTACTGCTTTTAGCCCTTTGATGATGATCGTTGTA GCCATCATGGGTTCATTCATATTGGCAGAAAAGATATACCTTGGAGGTATTGTTGGTTCAGCCTTGATAGTTATGGGCCTATACTCAGTCCTGTGGGGAA AGCACAAGGAGAAAATGGAGGTCGACCCGGAGGAGATACCAGAACCAGTAAAGGGTATTCAAGGAAATGGCAATTCTATAGTAGTGATTGAAGATATCGA AGCTAATGAAGTTCAGTTGCAGAAAGCAGAAGCCAACAACAATTTCTCTGCGATGGCCATGAGCATGCCCATGGCCCTGCCAGACCTTCCACACAAAGAG AGCCAAGAGCCAAGAGCCTAG
AA sequence Show only first row Show all	>Potri.003G192500.1 pacid=42784572 polypeptide=Potri.003G192500.1.p locus=Potri.003G192500 ID=Potri.003G192500.1.v4.1 annot-version=v4.1 MKNLGCCSKFLESSKPYFAMIALQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFALFFERKMQPKITFPVFMQIFVLALLGPVIDQNFYYAG LKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLDIKKVRCQAKLLGTLVTVAGAMFMTLYKGPIVEMLWSKHIHPRKSYVTDTTGTTDKDWFKGSILLIIA TLAWASLFVLQTKALKTYKNHQLTLTSLVCFIGTLQAIAVTFTMEHKSSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIVV AIMGSFILAEKIYLGGIVGSALIVMGLYSVLWGKHKEKMEVDPEEIPEPVKGIQGNGNSIVVIEDIEANEVQLQKAEANNNFSAMAMSMPMALPDLPHKE SQEPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.003G192500 [exp]	0	1
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	1.00	0.8418
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	4.69	0.7744	WRKY39.1
AT5G63710			Leucine-rich repeat protein ki...		Potri.001G306000 [exp]	10.24	0.7194
AT1G68490			unknown protein		Potri.015G047100 [exp]	13.03	0.6952
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	14.42	0.7115
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016100 [exp]	19.74	0.7093
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	19.97	0.6686	GSK1.2
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.008G083100 [exp]	22.71	0.7064	ZIP1.2
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Potri.018G132200 [exp]	24.73	0.6864	Pt-HKT1.2
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Potri.004G015001 [exp]	30.49	0.6463

Compare expression of checked genes

Potri.003G192500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.