Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68620 174 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 174 / 2e-51 ATCXE17 carboxyesterase 17 (.1) AT5G27320 158 / 2e-45 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G45610 150 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 146 / 4e-41 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 145 / 2e-40 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 140 / 1e-38 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 139 / 2e-38 ATCXE20 carboxyesterase 20 (.1) AT3G48700 139 / 3e-38 ATCXE13 carboxyesterase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192650 [exp] 671 / 0 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.001G032400 [exp] 619 / 0 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G031500 [exp] 384 / 2e-133 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 201 / 5e-62 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G113700 [exp] 199 / 3e-61 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.016G065000 [exp] 192 / 8e-59 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G118400 [exp] 191 / 3e-58 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G198800 [exp] 190 / 6e-58 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G101400 [exp] 190 / 8e-58 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024087 [exp] 449 / 2e-159 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10041632 [exp] 407 / 6e-143 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Lus10008439 [exp] 201 / 3e-62 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036168 [exp] 198 / 4e-61 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 191 / 2e-58 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017587 [exp] 183 / 4e-55 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10015988 [exp] 182 / 9e-55 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033548 [exp] 176 / 2e-52 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10013377 [exp] 184 / 1e-51 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021743 [exp] 159 / 4e-46 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00135 [poplar] [flax] COesterase Carboxylesterase family
Representative CDS sequence Show only first row Show all	>Potri.003G192600.1 pacid=42785722 polypeptide=Potri.003G192600.1.p locus=Potri.003G192600 ID=Potri.003G192600.1.v4.1 annot-version=v4.1 ATGGTCCATCAGAAGAAACTTGTGGAGGAGGTATCTGGCTGGCTAAGAACCTTTGATGATGGCTCGGTGGACCGGACATGGACCGGACCGCCTGAGGTCA CGTTCATGGCAGAGCCAGTGCCTCCACATGAGGAATTCAAAGAGGGTGTTGTCGTACGTGATGTCACCATTGATGAAAAGTCTGGCCTTAGAGTTAGAAT TTATCTACCACAACATGAGCCTCACTACACAGATAGTCATAATAAGCTTCCTATAATTGTCCATTTTCACGGTGGTGGTTTTTGCATTAGCCAAGCTGAT TGGTATATGTATTATTACATGTACTATAGGCTTGCTAGGTCAGCTTCAGCAATTGTTGTCTCGGTCTACTTAAGGCTAGCCCCCGAGCATCGCCTCCCAG CTGCTATTGATGATGGCTTCTCTGCCCTCATGTGGTTACGTTCATTAGGACAAGGACATGACTCTTATGAGCCATGGTTTAATAATTATGGAGATTTCAA CATGGTTTTTCTTATTGGAGATAGCTCAGGGGGGAACTTGGTGCACCATGTGGCTGCACGTGCTGGTCATGTGGATTTGAGTCCTGTAAGACTTGCCGGA GGCATTCCAGTCCATCCTGGATTTGTCCGGTCAGTGAGGAGCAAATCCGAGATGGAGCAACCAGAGTCGCCTTTCTTAACCCTAGACATGGTGGACAGGT TCTTGAAGTTGGCATTGCCAAAAGGGTGCACCAAGGACCACCCTTTTACGTGTCCAGTGGGACATGAAGCACCACCGCTAGACAGCCTTAATCTTCCACC ATTCTTGCTTTGTGTGGCGGAGACTGACCTGATTAGGGACACCGAGATGGAGTACTATGAGGCCATGAGAAAGGCTAATAAGGATGTGGAGTTGCTCATT AATCCTGGAGTGGGTCACAGTTTTTATCTTAACAAGATTGCTGTTGATATGGACCCACATACTGCTGCACAAACTACAGGTCTCATGGAAGGGATCATAG AGTTCATCAAGAGGCACTAA
AA sequence Show only first row Show all	>Potri.003G192600.1 pacid=42785722 polypeptide=Potri.003G192600.1.p locus=Potri.003G192600 ID=Potri.003G192600.1.v4.1 annot-version=v4.1 MVHQKKLVEEVSGWLRTFDDGSVDRTWTGPPEVTFMAEPVPPHEEFKEGVVVRDVTIDEKSGLRVRIYLPQHEPHYTDSHNKLPIIVHFHGGGFCISQAD WYMYYYMYYRLARSASAIVVSVYLRLAPEHRLPAAIDDGFSALMWLRSLGQGHDSYEPWFNNYGDFNMVFLIGDSSGGNLVHHVAARAGHVDLSPVRLAG GIPVHPGFVRSVRSKSEMEQPESPFLTLDMVDRFLKLALPKGCTKDHPFTCPVGHEAPPLDSLNLPPFLLCVAETDLIRDTEMEYYEAMRKANKDVELLI NPGVGHSFYLNKIAVDMDPHTAAQTTGLMEGIIEFIKRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.003G192600 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.013G102500 [exp]	2.44	0.9897
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	2.64	0.9853
AT1G73680		ALPHADOX2 ,ALPH...	alpha dioxygenase (.1.2)		Potri.012G049500 [exp]	4.89	0.9861
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008100 [exp]	5.47	0.9867
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140600 [exp]	8.06	0.9856
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.008G089700 [exp]	8.24	0.9859
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.008G047900 [exp]	8.48	0.9838
AT4G08910			unknown protein		Potri.014G150900 [exp]	10.39	0.9855
AT1G75580			SAUR-like auxin-responsive pro...		Potri.005G237200 [exp]	10.67	0.9709	SAUR31
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	11.22	0.9766

Compare expression of checked genes

Potri.003G192600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.