Plant FIBer expression Database

Potri.003G193000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74320 524 / 0 Protein kinase superfamily protein (.1)
AT4G09760 439 / 7e-155 Protein kinase superfamily protein (.1.2.3)
AT1G71697 435 / 2e-153 ATCK1 choline kinase 1 (.1)
AT2G26830 185 / 4e-55 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G032000
[exp]
638 / 0 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1)
Potri.002G063700
[exp]
470 / 6e-167 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3)
Potri.005G197500
[exp]
470 / 4e-166 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3)
Potri.006G120700
[exp]
182 / 8e-54 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026145
[exp]
513 / 0 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1)
Lus10024127
[exp]
499 / 6e-177 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1)
Lus10028728
[exp]
462 / 6e-164 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3)
Lus10028696
[exp]
460 / 5e-163 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3)
Lus10005386
[exp]
453 / 5e-159 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1)
Lus10019424
[exp]
168 / 2e-46 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Lus10008675
[exp]
96 / 7e-23 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01636 APH Phosphotransferase enzyme family
Representative CDS sequence
>Potri.003G193000.2 pacid=42785155 polypeptide=Potri.003G193000.2.p locus=Potri.003G193000 ID=Potri.003G193000.2.v4.1 annot-version=v4.1
ATGGGTGCCGTAGAAAATCCTGTGGACAATAAAGAATATCGGATACCAGGAGAGGCGAAGGAGATTTTGAAATCATTGGCCTCCAAGTGGGAAGATGTGG
CTGATGCAAGTTCGTTGCAGGTGATCCCTTTAAAGGGTGCAATGACCAATGAGGTTTTCCAAATAAAGTGGCCGACGAAGACAGAGAATGTGTCACATAA
GGTTTTAGTTAGGATCTACGGTGAAGGTGTGGAGGTGTTCTTTGATCGAGAAAATGAGATTCATACGTTTGAGTTCATTTCAAAGCAAGGGCAGGGACCT
CGTTTACTAGGGCGGTTCTCAAATGGACGGATTGAAGAGTTCATCCATGCACGGACTCTATCGGCCTCTGATCTGCGTGATCCTGATATGTCTGCTCTCA
TAGCAGCTAAAATGAAGGAGTTTCATGGTCTTGAGATGCCAGGTCCAAAGAATATCTCCCTGTGGGATAGATTGCGAAATTGGCTTGAAACAGCAAAGCG
TTTGTGTACTCCAGAAGAAGCTAAACCCTTTCGCTTGGATTCTATCGAGGAGGAGATTTCCTTGTTGGAAAAGGAACTATCAGGAGATCGGTCTATAGGG
TTTTGCCACAATGATTTACAATATGGCAACATCATGATTGATGAAAAGACAAGAGTGATAACTATAATTGACTATGAGTATGCAAGTTACAACCCTATCG
CCTTTGATATAGCAAACCACTTCTGTGAGATGACTGCTGACTATCATACAGATACGCCCCATATTTTGGACTATAGTAAATACCCTGGTTTGGATGAGCG
TCAAAGATTTCTCCGCGTATATCTGAGTTCATCAGGTGGTCAACCTAGCGACAATGAAGTGGAGCAGCTAATCGAAAATGTTGAGAAGTATAAGCTTGCA
AGCCATCTTTTTTGGGGGTTATGGGGGATAATATCGGAACATGTCAATGAAATTGACTTTGACTACATGGAATATGCAAGGCAGAGGTTCGGACAGTACT
GGTTAAGGAAGCCTGCTTTATTGGGTTCTTTGGGAACCACCCCTGATGTAGTTTCGGCTGATGGTAATTATCCTGCCTAA
AA sequence
>Potri.003G193000.2 pacid=42785155 polypeptide=Potri.003G193000.2.p locus=Potri.003G193000 ID=Potri.003G193000.2.v4.1 annot-version=v4.1
MGAVENPVDNKEYRIPGEAKEILKSLASKWEDVADASSLQVIPLKGAMTNEVFQIKWPTKTENVSHKVLVRIYGEGVEVFFDRENEIHTFEFISKQGQGP
RLLGRFSNGRIEEFIHARTLSASDLRDPDMSALIAAKMKEFHGLEMPGPKNISLWDRLRNWLETAKRLCTPEEAKPFRLDSIEEEISLLEKELSGDRSIG
FCHNDLQYGNIMIDEKTRVITIIDYEYASYNPIAFDIANHFCEMTADYHTDTPHILDYSKYPGLDERQRFLRVYLSSSGGQPSDNEVEQLIENVEKYKLA
SHLFWGLWGIISEHVNEIDFDYMEYARQRFGQYWLRKPALLGSLGTTPDVVSADGNYPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74320 Protein kinase superfamily pro... Potri.003G193000
[exp]
0 1
Potri.009G086900
[exp]
4.24 0.7221
AT1G65930 cICDH cytosolic NADP+-dependent isoc... Potri.017G144541
[exp]
6.48 0.7498
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.003G081800
[exp]
10.39 0.7085 RAB1.6
AT3G02360 6-phosphogluconate dehydrogena... Potri.004G108920
[exp]
12.96 0.6820
AT5G64813 LIP1 Light Insensitive Period1, Ras... Potri.007G080100
[exp]
14.28 0.6097
AT2G23070 Protein kinase superfamily pro... Potri.007G054100
[exp]
26.11 0.6711
AT1G25682 Family of unknown function (DU... Potri.008G115700
[exp]
28.46 0.6472
AT4G16144 AMSH3 associated molecule with the S... Potri.010G141100
[exp]
28.61 0.6362
AT5G51400 PLAC8 family protein (.1) Potri.003G108800
[exp]
29.52 0.6810
AT1G12350 ATCOAB 4-phospho-panto-thenoylcystein... Potri.002G090500
[exp]
30.29 0.6298

Potri.003G193000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.